gnu: Add r-mutationalpatterns.

* gnu/packages/bioinformatics.scm (r-mutationalpatterns): New variable.
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Roel Janssen 2016-10-27 20:07:05 +02:00
parent 327be74720
commit 7500e42b3e
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@ -7394,6 +7394,39 @@ library implementing most of the pipeline's features.")
@dfn{RNA-centric annotation system} (RCAS).")
(license license:agpl3+)))
(define-public r-mutationalpatterns
(package
(name "r-mutationalpatterns")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "MutationalPatterns" version))
(sha256
(base32
"1a3c2bm0xx0q4gf98jiw74msmdf2fr8rbsdysd5ww9kqlzmsbr17"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
("r-genomeinfodb" ,r-genomeinfodb)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-iranges" ,r-iranges)
("r-nmf" ,r-nmf)
("r-plyr" ,r-plyr)
("r-pracma" ,r-pracma)
("r-reshape2" ,r-reshape2)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-variantannotation" ,r-variantannotation)))
(home-page "http://bioconductor.org/packages/MutationalPatterns/")
(synopsis "Extract and visualize mutational patterns in genomic data")
(description "This package provides an extensive toolset for the
characterization and visualization of a wide range of mutational patterns
in SNV base substitution data.")
(license license:expat)))
(define-public emboss
(package
(name "emboss")