gnu: Add r-edger.

* gnu/packages/bioinformatics.scm (r-edger): New variable.
This commit is contained in:
Roel Janssen 2016-07-04 14:49:07 +02:00
parent 7d4224d794
commit 744004a31f
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@ -4437,6 +4437,31 @@ translation between different chromosome sequence naming conventions (e.g.,
names in their natural, rather than lexicographic, order.")
(license license:artistic2.0)))
(define-public r-edger
(package
(name "r-edger")
(version "3.14.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "edgeR" version))
(sha256
(base32
"14vrygy7rz5ngaap4kgkvr3j18y5l6m742n79h68plk6iqgmsskn"))))
(properties `((upstream-name . "edgeR")))
(build-system r-build-system)
(propagated-inputs
`(("r-limma" ,r-limma)))
(home-page "http://bioinf.wehi.edu.au/edgeR")
(synopsis "EdgeR does empirical analysis of digital gene expression data")
(description "This package can do differential expression analysis of
RNA-seq expression profiles with biological replication. It implements a range
of statistical methodology based on the negative binomial distributions,
including empirical Bayes estimation, exact tests, generalized linear models
and quasi-likelihood tests. It be applied to differential signal analysis of
other types of genomic data that produce counts, including ChIP-seq, SAGE and
CAGE.")
(license license:gpl2+)))
(define-public r-variantannotation
(package
(name "r-variantannotation")