gnu: Add r-lefser.
* gnu/packages/bioconductor.scm (r-lefser): New variable.
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@ -12320,6 +12320,29 @@ background correction, and quality control features for GoldenGate, Infinium,
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and Infinium HD arrays are also included.")
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and Infinium HD arrays are also included.")
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(license license:gpl2)))
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(license license:gpl2)))
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(define-public r-lefser
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(package
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(name "r-lefser")
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(version "1.10.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "lefser" version))
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(sha256
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(base32
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"0wi70b4k7s0xj7bh46s0x0fckqc5qspzq8k4k913vg6cnhqgw2dd"))))
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(properties `((upstream-name . "lefser")))
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(build-system r-build-system)
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(propagated-inputs (list r-coin r-ggplot2 r-mass r-summarizedexperiment))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/waldronlab/lefser")
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(synopsis "LEfSE method for microbiome biomarker discovery")
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(description
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"Lefser is an implementation in R of the popular \"LDA Effect
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Size\" (LEfSe) method for microbiome biomarker discovery. It uses the
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Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis
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to find biomarkers of groups and sub-groups.")
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(license license:artistic2.0)))
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(define-public r-lumi
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(define-public r-lumi
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(package
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(package
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(name "r-lumi")
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(name "r-lumi")
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