gnu: Add r-azimuth.
* gnu/packages/bioinformatics.scm (r-azimuth): New variable. Change-Id: I2b0d087378028663ee8d76ced8950f7a9721cb03 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -11171,6 +11171,65 @@ single-cell data.")
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"This package is designed to streamline scATAC analyses in R.")
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(license license:gpl2+))))
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(define-public r-azimuth
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(let ((commit "243ee5db80fcbffa3452c944254a325a3da2ef9e")
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(revision "1"))
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(package
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(name "r-azimuth")
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(version (git-version "0.5.0" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/satijalab/azimuth")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "0vs4813kf2cv2j1z800ihwk62bw4dgmwgkd47rln58581chv39zm"))))
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(properties `((upstream-name . "Azimuth")))
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(build-system r-build-system)
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(propagated-inputs (list r-bsgenome-hsapiens-ucsc-hg38
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r-dt
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r-ensdb-hsapiens-v86
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r-future
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r-ggplot2
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r-glmgampoi
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r-googlesheets4
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r-hdf5r
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r-htmltools
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r-httr
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r-jaspar2020
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r-jsonlite
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r-matrix
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r-patchwork
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r-plotly
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r-presto
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r-rcpp
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r-rlang
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r-scales
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r-seurat
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r-seuratdata
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r-seuratdisk
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r-seuratobject
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r-shiny
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r-shinybs
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r-shinydashboard
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r-shinyjs
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r-signac
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r-stringr
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r-tfbstools
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r-withr))
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(home-page "https://github.com/satijalab/azimuth")
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(synopsis
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"Shiny app showcasing a single-cell data query-reference mapping algorithm")
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(description "Azimuth utilizes an annotated reference dataset. It
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automates the processing, analysis, and interpretation. This applies
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specifically to new single-cell RNA-seq or ATAC-seq experiments. Azimuth
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leverages a reference-based mapping pipeline that inputs acounts matrix and
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performs normalization, visualization, cell annotation, and differential
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expression.")
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(license license:gpl3))))
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(define-public r-icellnet
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;; v1.0 tagged in 2020, last commit contains many fixes.
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;; DESCRIPTION says Version: 0.0.0.9000.
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