gnu: Add r-azimuth.

* gnu/packages/bioinformatics.scm (r-azimuth): New variable.

Change-Id: I2b0d087378028663ee8d76ced8950f7a9721cb03
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
nafkhamdc 2024-01-11 11:20:43 +00:00 committed by Ricardo Wurmus
parent 40f5a3ce43
commit 5960c3cdc4
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@ -11171,6 +11171,65 @@ single-cell data.")
"This package is designed to streamline scATAC analyses in R.")
(license license:gpl2+))))
(define-public r-azimuth
(let ((commit "243ee5db80fcbffa3452c944254a325a3da2ef9e")
(revision "1"))
(package
(name "r-azimuth")
(version (git-version "0.5.0" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/satijalab/azimuth")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32 "0vs4813kf2cv2j1z800ihwk62bw4dgmwgkd47rln58581chv39zm"))))
(properties `((upstream-name . "Azimuth")))
(build-system r-build-system)
(propagated-inputs (list r-bsgenome-hsapiens-ucsc-hg38
r-dt
r-ensdb-hsapiens-v86
r-future
r-ggplot2
r-glmgampoi
r-googlesheets4
r-hdf5r
r-htmltools
r-httr
r-jaspar2020
r-jsonlite
r-matrix
r-patchwork
r-plotly
r-presto
r-rcpp
r-rlang
r-scales
r-seurat
r-seuratdata
r-seuratdisk
r-seuratobject
r-shiny
r-shinybs
r-shinydashboard
r-shinyjs
r-signac
r-stringr
r-tfbstools
r-withr))
(home-page "https://github.com/satijalab/azimuth")
(synopsis
"Shiny app showcasing a single-cell data query-reference mapping algorithm")
(description "Azimuth utilizes an annotated reference dataset. It
automates the processing, analysis, and interpretation. This applies
specifically to new single-cell RNA-seq or ATAC-seq experiments. Azimuth
leverages a reference-based mapping pipeline that inputs acounts matrix and
performs normalization, visualization, cell annotation, and differential
expression.")
(license license:gpl3))))
(define-public r-icellnet
;; v1.0 tagged in 2020, last commit contains many fixes.
;; DESCRIPTION says Version: 0.0.0.9000.