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gnu: python-pysam, python2-pysam: Move to bioinformatics.scm.

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* gnu/packages/python.scm (python-pysam, python2-pysam): Move to...
* gnu/packages/bioinformatics.scm (python-pysam, python2-pysam):
  ...here.
This commit is contained in:
Ricardo Wurmus 2016-02-25 14:01:14 +01:00
parent 937690f909
commit 55a9a8c2b9
2 changed files with 38 additions and 38 deletions
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38
gnu/packages/bioinformatics.scm
View File

@ -838,6 +838,44 @@ well as many of the command line options.")
multiple sequence alignments.")
(license license:expat)))
(define-public python-pysam
(package
(name "python-pysam")
(version "0.8.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-"
version ".tar.gz"))
(sha256
(base32
"1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; tests are excluded in the manifest
#:phases
(alist-cons-before
'build 'set-flags
(lambda _
(setenv "LDFLAGS" "-lncurses")
(setenv "CFLAGS" "-D_CURSES_LIB=1"))
%standard-phases)))
(inputs
`(("python-cython" ,python-cython)
("python-setuptools" ,python-setuptools)
("ncurses" ,ncurses)
("zlib" ,zlib)))
(home-page "https://github.com/pysam-developers/pysam")
(synopsis "Python bindings to the SAMtools C API")
(description
"Pysam is a Python module for reading and manipulating files in the
SAM/BAM format. Pysam is a lightweight wrapper of the SAMtools C API. It
also includes an interface for tabix.")
(license license:expat)))
(define-public python2-pysam
(package-with-python2 python-pysam))
(define-public clipper
(package
(name "clipper")

38
gnu/packages/python.scm
View File

@ -1040,44 +1040,6 @@ get the local timezone information, unless you know the zoneinfo name, and
under several distributions that's hard or impossible to figure out.")
(license cc0)))
(define-public python-pysam
(package
(name "python-pysam")
(version "0.8.1")
(source
(origin
(method url-fetch)
(uri (string-append "https://pypi.python.org/packages/source/p/pysam/pysam-"
version ".tar.gz"))
(sha256
(base32
"1fb6i6hbpzxaxb62kyyp5alaidwhj40f7c6gwbhr6njzlqd5l459"))))
(build-system python-build-system)
(arguments
`(#:tests? #f ; tests are excluded in the manifest
#:phases
(alist-cons-before
'build 'set-flags
(lambda _
(setenv "LDFLAGS" "-lncurses")
(setenv "CFLAGS" "-D_CURSES_LIB=1"))
%standard-phases)))
(inputs
`(("python-cython" ,python-cython)
("python-setuptools" ,python-setuptools)
("ncurses" ,ncurses)
("zlib" ,zlib)))
(home-page "https://github.com/pysam-developers/pysam")
(synopsis "Python bindings to the SAMtools C API")
(description
"Pysam is a Python module for reading and manipulating files in the
SAM/BAM format. Pysam is a lightweight wrapper of the SAMtools C API. It
also includes an interface for tabix.")
(license license:expat)))
(define-public python2-pysam
(package-with-python2 python-pysam))
(define-public python2-pysqlite
(package
(name "python2-pysqlite")