gnu: Add r-seuratdata.
* gnu/packages/cran.scm (r-seuratdata): New variable.
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@ -28740,6 +28740,44 @@ rapid and on-disk conversion between h5Seurat and AnnData objects, with the
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goal of enhancing interoperability between Seurat and Scanpy.")
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goal of enhancing interoperability between Seurat and Scanpy.")
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(license license:gpl3))))
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(license license:gpl3))))
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(define-public r-seuratdata
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(let ((commit "b59556b24d7d6728a5744c9c715dd5f7f32ed7a5")
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(revision "1"))
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(package
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(name "r-seuratdata")
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(version (git-version "0.2.1" revision commit))
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/satijalab/seurat-data")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32 "1xfdmdmgn4r0z6w4cxa98ic6xk8i6qz054r215dvqbjs1vydsbf9"))))
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(properties `((upstream-name . "SeuratData")))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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;; When there is no HOME directory, this package will fail to load
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;; the included list of packages.
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(add-after 'unpack 'set-HOME
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(lambda _ (setenv "HOME" "/tmp"))))))
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(propagated-inputs
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`(("r-cli" ,r-cli)
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("r-crayon" ,r-crayon)
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("r-rappdirs" ,r-rappdirs)))
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(home-page "https://github.com/satijalab/seurat-data")
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(synopsis "Install and manage Seurat datasets")
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(description
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"Single cell RNA sequencing datasets can be large, consisting of
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matrices that contain expression data for several thousand features across
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several thousand cells. This package is designed to easily install, manage,
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and learn about various single-cell datasets, provided Seurat objects and
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distributed as independent packages.")
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(license license:gpl3))))
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(define-public r-phangorn
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(define-public r-phangorn
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(package
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(package
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(name "r-phangorn")
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(name "r-phangorn")
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