gnu: Add r-basic4cseq.

* gnu/packages/bioconductor.scm (r-basic4cseq): New variable.

Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3
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Mădălin Ionel Patrașcu 2023-11-06 12:06:40 +01:00 committed by Ricardo Wurmus
parent 459d9ebd2a
commit 47a4195649
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@ -22591,6 +22591,37 @@ within a certain time frame are deleted. This aims to reduce disk usage by
eliminating obsolete caches generated by old versions of packages.")
(license license:gpl3)))
(define-public r-basic4cseq
(package
(name "r-basic4cseq")
(version "1.38.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Basic4Cseq" version))
(sha256
(base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"))))
(properties `((upstream-name . "Basic4Cseq")))
(build-system r-build-system)
(propagated-inputs
(list r-biostrings
r-bsgenome-ecoli-ncbi-20080805
r-catools
r-genomicalignments
r-genomicranges
r-rcircos))
(home-page "https://bioconductor.org/packages/Basic4Cseq")
(synopsis "Analyzing 4C-seq data")
(description
"Basic4Cseq is an R package for basic filtering, analysis and subsequent
visualization of @acronym{4C-seq, circular chromosome conformation capture
sequencing} data. Virtual fragment libraries can be created for any BSGenome
package, and filter functions for both reads and fragments and basic quality
controls are included. Fragment data in the vicinity of the experiment's
viewpoint can be visualized as a coverage plot based on a running median
approach and a multi-scale contact profile.")
(license license:lgpl3)))
(define-public r-basilisk-utils
(package
(name "r-basilisk-utils")