gnu: clipper: Update to 1.1.
* gnu/packages/bioinformatics.scm (clipper): Update to 1.1. [source]: Delete pre-built libraries. [inputs]: Add python2-pandas.
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@ -1422,7 +1422,7 @@ databases.")
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(define-public clipper
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(package
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(name "clipper")
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(version "0.3.0")
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(version "1.1")
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(source (origin
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(method url-fetch)
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(uri (string-append
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@ -1431,12 +1431,18 @@ databases.")
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256
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(base32
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"1q7jpimsqln7ic44i8v2rx2haj5wvik8hc1s2syd31zcn0xk1iyq"))
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"0pflmsvhbf8izbgwhbhj1i7349sw1f55qpqj8ljmapp16hb0p0qi"))
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(modules '((guix build utils)))
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(snippet
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;; remove unnecessary setup dependency
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'(substitute* "setup.py"
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(("setup_requires = .*") "")))))
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'(begin
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;; remove unnecessary setup dependency
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(substitute* "setup.py"
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(("setup_requires = .*") ""))
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(for-each delete-file
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'("clipper/src/peaks.so"
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"clipper/src/readsToWiggle.so"))
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(delete-file-recursively "dist/")
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#t))))
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(build-system python-build-system)
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(arguments `(#:python ,python-2)) ; only Python 2 is supported
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(inputs
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@ -1445,6 +1451,7 @@ databases.")
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("python-cython" ,python2-cython)
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("python-scikit-learn" ,python2-scikit-learn)
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("python-matplotlib" ,python2-matplotlib)
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("python-pandas" ,python2-pandas)
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("python-pysam" ,python2-pysam)
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("python-numpy" ,python2-numpy)
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("python-scipy" ,python2-scipy)))
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