gnu: Add pbcopper.
* gnu/packages/bioinformatics.scm (pbcopper): New variable.
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@ -569,6 +569,42 @@ BED, GFF/GTF, VCF.")
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`(("samtools" ,samtools)
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`(("samtools" ,samtools)
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("zlib" ,zlib)))))
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("zlib" ,zlib)))))
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(define-public pbcopper
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;; This is the latest commit at the time of this writing.
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(let ((commit "ad4143afd25a0bd6adc977c544865c992a515841")
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(revision "1"))
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(package
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(name "pbcopper")
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(version (git-version "1.9.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/PacificBiosciences/pbcopper")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1qxkbpdkamfisnk36lpi1vdvf3p1lg2hdqna3xgd94pz52bwbmp7"))))
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(build-system meson-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'patch-meson-files
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(lambda* (#:key inputs #:allow-other-keys)
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(substitute* "meson.build"
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(("-msse4.1") "")))))))
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(inputs
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`(("boost" ,boost)))
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(native-inputs
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`(("googletest" ,googletest)
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("pkg-config" ,pkg-config)))
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(home-page "https://github.com/PacificBiosciences/pbcopper")
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(synopsis "Data structures, algorithms, and utilities for PacBio C++ applications")
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(description
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"The pbcopper library provides a suite of data structures, algorithms,
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and utilities for PacBio C++ applications.")
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(license license:bsd-3))))
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(define-public pbbam
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(define-public pbbam
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(package
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(package
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(name "pbbam")
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(name "pbbam")
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