gnu: Add Infernal.
* gnu/packages/bioinformatics.scm (infernal): New variable.
This commit is contained in:
parent
d058708e86
commit
35aa90a1fd
@ -4835,6 +4835,32 @@ data in the form of VCF files.")
|
||||
;; at https://vcftools.github.io/license.html
|
||||
(license license:lgpl3)))
|
||||
|
||||
(define-public infernal
|
||||
(package
|
||||
(name "infernal")
|
||||
(version "1.1.2")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (string-append "http://eddylab.org/software/infernal/"
|
||||
"infernal-" version ".tar.gz"))
|
||||
(sha256
|
||||
(base32
|
||||
"0sr2hiz3qxfwqpz3whxr6n82p3x27336v3f34iqznp10hks2935c"))))
|
||||
(build-system gnu-build-system)
|
||||
(native-inputs
|
||||
`(("perl" ,perl))) ; for tests
|
||||
(home-page "http://eddylab.org/infernal/")
|
||||
(synopsis "Inference of RNA alignments")
|
||||
(description "Infernal (\"INFERence of RNA ALignment\") is a tool for
|
||||
searching DNA sequence databases for RNA structure and sequence similarities.
|
||||
It is an implementation of a special case of profile stochastic context-free
|
||||
grammars called @dfn{covariance models} (CMs). A CM is like a sequence
|
||||
profile, but it scores a combination of sequence consensus and RNA secondary
|
||||
structure consensus, so in many cases, it is more capable of identifying RNA
|
||||
homologs that conserve their secondary structure more than their primary
|
||||
sequence.")
|
||||
(license license:bsd-3)))
|
||||
|
||||
(define-public r-vegan
|
||||
(package
|
||||
(name "r-vegan")
|
||||
|
Loading…
Reference in New Issue
Block a user