gnu: Add rtracklayer.
* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
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@ -3701,6 +3701,51 @@ junction detection, and working with the nucleotide content of the
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alignments.")
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(license license:artistic2.0)))
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(define-public r-rtracklayer
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(package
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(name "r-rtracklayer")
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(version "1.30.1")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "rtracklayer" version))
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(sha256
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(base32
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"1if31hg56islx5vwydpgs5gkyas26kyvv2ljv1c7jikpm62w14qv"))))
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(build-system r-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'use-system-zlib
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(lambda _
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(substitute* "DESCRIPTION"
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(("zlibbioc, ") ""))
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(substitute* "NAMESPACE"
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(("import\\(zlibbioc\\)") ""))
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#t)))))
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(inputs
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`(("zlib" ,zlib)))
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(propagated-inputs
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`(("r-biocgenerics" ,r-biocgenerics)
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("r-biostrings" ,r-biostrings)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicranges" ,r-genomicranges)
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("r-iranges" ,r-iranges)
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("r-rcurl" ,r-rcurl)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)
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("r-xml" ,r-xml)
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("r-xvector" ,r-xvector)))
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(home-page "http://bioconductor.org/packages/rtracklayer")
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(synopsis "R interface to genome browsers and their annotation tracks")
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(description
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"rtracklayer is an extensible framework for interacting with multiple
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genome browsers (currently UCSC built-in) and manipulating annotation tracks
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in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit
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built-in). The user may export/import tracks to/from the supported browsers,
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as well as query and modify the browser state, such as the current viewport.")
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(license license:artistic2.0)))
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(define-public r-qtl
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(package
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(name "r-qtl")
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