gnu: Add rtracklayer.

* gnu/packages/bioinformatics.scm (r-rtracklayer): New variable.
This commit is contained in:
Ricardo Wurmus 2015-12-18 14:09:00 +01:00
parent d8a828af78
commit 317755ff0f

View File

@ -3701,6 +3701,51 @@ junction detection, and working with the nucleotide content of the
alignments.")
(license license:artistic2.0)))
(define-public r-rtracklayer
(package
(name "r-rtracklayer")
(version "1.30.1")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "rtracklayer" version))
(sha256
(base32
"1if31hg56islx5vwydpgs5gkyas26kyvv2ljv1c7jikpm62w14qv"))))
(build-system r-build-system)
(arguments
`(#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-system-zlib
(lambda _
(substitute* "DESCRIPTION"
(("zlibbioc, ") ""))
(substitute* "NAMESPACE"
(("import\\(zlibbioc\\)") ""))
#t)))))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-biocgenerics" ,r-biocgenerics)
("r-biostrings" ,r-biostrings)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcurl" ,r-rcurl)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)
("r-xml" ,r-xml)
("r-xvector" ,r-xvector)))
(home-page "http://bioconductor.org/packages/rtracklayer")
(synopsis "R interface to genome browsers and their annotation tracks")
(description
"rtracklayer is an extensible framework for interacting with multiple
genome browsers (currently UCSC built-in) and manipulating annotation tracks
in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit
built-in). The user may export/import tracks to/from the supported browsers,
as well as query and modify the browser state, such as the current viewport.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")