gnu: macs: Update to 2.2.9.1.
* gnu/packages/bioinformatics.scm (macs): Update to 2.2.9.1. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. [native-inputs]: Move python-cython from here... [inputs]: ...and python-numpy from here... [propagated-inputs]: ...to here.
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@ -7023,7 +7023,7 @@ experiments.")
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(define-public macs
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(package
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(name "macs")
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(version "2.2.7.1")
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(version "2.2.9.1")
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(source (origin
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;; The PyPi tarball does not contain tests.
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(method git-fetch)
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@ -7033,7 +7033,7 @@ experiments.")
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(file-name (git-file-name name version))
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(sha256
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(base32
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"08zsgh65xbpv1md2s3wqmrk9g2mz6izmn59ryw5lbac54120p291"))
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"10vwc09fq4nvbd39hax1949mvq2wvkgz0k3p2zqmqwq8hv9r5l0j"))
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(modules '((guix build utils)))
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;; Remove files generated by Cython
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(snippet
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@ -7048,21 +7048,17 @@ experiments.")
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;; Python 3.10 is in fact more recent than 3.6.
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(substitute* "setup.py"
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(("float\\(sys.version\\[:3\\]\\)<3.6") "False"))))))
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(build-system python-build-system)
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(build-system pyproject-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-before 'build 'set-HOME
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(lambda _ (setenv "HOME" "/tmp")))
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(replace 'check
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(lambda* (#:key tests? inputs outputs #:allow-other-keys)
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(when tests?
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(add-installed-pythonpath inputs outputs)
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(invoke "pytest" "-v")))))))
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(inputs
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(list python-numpy))
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(lambda _ (setenv "HOME" "/tmp"))))))
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;; Propagate these for use of macs as a library.
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(propagated-inputs
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(list python-cython python-numpy))
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(native-inputs
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(list python-cython python-pytest))
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(list python-pytest))
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(home-page "https://github.com/macs3-project/MACS")
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(synopsis "Model based analysis for ChIP-Seq data")
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(description
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