gnu: python-afdko: Update to 3.9.4.

* gnu/packages/fontutils.scm (python-afdko): Update to 3.9.4.
[source]: Remove patch.
[arguments]: Disable a few extra tests in the check phase override.
Delete use-system-libxml2 phase.  Update patch-problematic-requirements phase.
* gnu/packages/patches/python-afdko-suppress-copyright-test.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): De-register it.

gnu/local.mk

@@ -1734,7 +1734,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/python-3-fix-tests.patch			\
   %D%/packages/patches/python-3-hurd-configure.patch		\
   %D%/packages/patches/python-3-no-static-lib.patch		\
-  %D%/packages/patches/python-afdko-suppress-copyright-test.patch	\
   %D%/packages/patches/python-aionotify-0.2.0-py3.8.patch	\
   %D%/packages/patches/python-argcomplete-1.11.1-fish31.patch	\
   %D%/packages/patches/python-cross-compile.patch		\

gnu/packages/fontutils.scm

@@ -12,7 +12,7 @@
 ;;; Copyright © 2019, 2020, 2022 Marius Bakke <marius@gnu.org>
 ;;; Copyright © 2020 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr>
-;;; Copyright © 2021, 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2021, 2022, 2023 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2021 Sarah Morgensen <iskarian@mgsn.dev>
 ;;; Copyright © 2022 Felipe Balbi <balbi@kernel.org>
 ;;;
@@ -139,14 +139,13 @@ them as it goes.")
 (define-public python-afdko
   (package
     (name "python-afdko")
-    (version "3.9.1")
+    (version "3.9.4")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "afdko" version))
        (sha256
-        (base32 "0k1204vykgx32saa495s1lgmz1dixcp8bjiv486imx77killvm02"))
-       (patches (search-patches "python-afdko-suppress-copyright-test.patch"))
+        (base32 "1d3b1590gxlindh1sjhwvxnryn5zil98hgdwbgsr76fd657r3f99"))
        (modules '((guix build utils)))
        (snippet
         #~(begin
@@ -172,27 +171,13 @@ them as it goes.")
               (substitute* "CMakeLists.txt"
                 (("CMAKE_CXX_STANDARD 11")
                  "CMAKE_CXX_STANDARD 17"))))
-          (add-after 'unpack 'use-system-libxml2
-            (lambda _
-              ;; XXX: These horrifying substitutions revert this upstream
-              ;; PR: <https://github.com/adobe-type-tools/afdko/pull/1527>.
-              ;; Hopefully it's only temporary..!
-              (substitute* (find-files "." "^CMakeLists.txt$")
-                (("\\(\\(NOT \\$\\{LibXml2_FOUND\\}\\) OR \
-\"\\$\\{CMAKE_SYSTEM\\}\" MATCHES \"Linux\"\\)")
-                 "(NOT ${LibXml2_FOUND})")
-                (("\\(\\(\\$\\{LibXml2_FOUND\\}\\) AND \
-\\(NOT \"\\$\\{CMAKE_SYSTEM\\}\" MATCHES \"Linux\"\\)\\)")
-                 "(${LibXml2_FOUND})"))
-                (substitute* "cmake/ExternalLibXML2.cmake"
-                  (("set\\(LIBXML2_STATIC_INCLUDE_DIR")
-                   "set(LIBXML2_INCLUDE_DIR)"))))
           (add-after 'unpack 'patch-problematic-requirements
             (lambda _
               (substitute* "requirements.txt"
                 ;; Remove lxml because the version requested here is different
                 ;; than the one propagated by the python-fonttools package.
-                (("^lxml==.*") ""))))
+                (("^lxml==.*") "")
+                (("<=4.38.0") ">=4.38.0"))))
           (add-after 'unpack 'patch-setup.py
             (lambda _
               ;; There is no use for Python-provided CMake nor Ninja binaries.
@@ -232,7 +217,14 @@ them as it goes.")
                         (number->string (parallel-job-count))
                         ;; This test is known to fail on multiple architectures.
                         ;; https://github.com/adobe-type-tools/afdko/issues/1163
-                        "-k not test_type1mm_inputs"))))
+                        "-k"
+                        (string-append
+                         "not test_type1mm_inputs "
+                         ;; These tests fail for unknown reasons (see:
+                         ;; https://github.com/adobe-type-tools/afdko/issues/1635).
+                         "and not test_rvrn_vf "
+                         "and not test_cjk_vf "
+                         "and not test_sparse_cjk_vf")))))
           (add-after 'check 'wrap
             (assoc-ref %standard-phases 'wrap))
           (add-before 'wrap 'wrap-PATH

gnu/packages/patches/python-afdko-suppress-copyright-test.patch

@@ -1,20 +0,0 @@
-Supress copyright check in tests which can differ based on current year.
-
-  https://github.com/adobe-type-tools/afdko/issues/1589
-
-Adapted from upstream:
-
-  https://github.com/adobe-type-tools/afdko/commit/feebd77d9b6507a0b32f837535511be3c94d9c6f
-
-diff --git a/tests/tx_test.py b/tests/tx_test.py
---- a/tests/tx_test.py
-+++ b/tests/tx_test.py
-@@ -1246,7 +1246,7 @@ def test_ufo_fontinfo_parsing(file, msg, ret_code):
-     if (ret_code == 0):
-         expected_path = generate_ps_dump(expected_path)
-         output_path = generate_ps_dump(output_path)
--        assert differ([expected_path, output_path])
-+        assert differ([expected_path, output_path, '-s'] + PFA_SKIP)
-     else:
-         arg = [TOOL, '-t1', '-f', ufo_input_path]
-         assert subprocess.call(arg) == 6