gnu: Add r-edaseq.
* gnu/packages/bioinformatics.scm (r-edaseq): New variable.
This commit is contained in:
parent
7b46532779
commit
296b3c631c
@ -9052,6 +9052,44 @@ differential expression based on a model using the negative binomial
|
|||||||
distribution.")
|
distribution.")
|
||||||
(license license:gpl3+)))
|
(license license:gpl3+)))
|
||||||
|
|
||||||
|
(define-public r-edaseq
|
||||||
|
(package
|
||||||
|
(name "r-edaseq")
|
||||||
|
(version "2.10.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "EDASeq" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"0f25dfc8hdii9fjm3bf89vy9jkxv23sa62fkcga5b4gkipwrvm9a"))))
|
||||||
|
(properties `((upstream-name . "EDASeq")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-annotationdbi" ,r-annotationdbi)
|
||||||
|
("r-aroma-light" ,r-aroma-light)
|
||||||
|
("r-biobase" ,r-biobase)
|
||||||
|
("r-biocgenerics" ,r-biocgenerics)
|
||||||
|
("r-biomart" ,r-biomart)
|
||||||
|
("r-biostrings" ,r-biostrings)
|
||||||
|
("r-deseq" ,r-deseq)
|
||||||
|
("r-genomicfeatures" ,r-genomicfeatures)
|
||||||
|
("r-genomicranges" ,r-genomicranges)
|
||||||
|
("r-iranges" ,r-iranges)
|
||||||
|
("r-rsamtools" ,r-rsamtools)
|
||||||
|
("r-shortread" ,r-shortread)))
|
||||||
|
(home-page "https://github.com/drisso/EDASeq")
|
||||||
|
(synopsis "Exploratory data analysis and normalization for RNA-Seq")
|
||||||
|
(description
|
||||||
|
"This package provides support for numerical and graphical summaries of
|
||||||
|
RNA-Seq genomic read data. Provided within-lane normalization procedures to
|
||||||
|
adjust for GC-content effect (or other gene-level effects) on read counts:
|
||||||
|
loess robust local regression, global-scaling, and full-quantile
|
||||||
|
normalization. Between-lane normalization procedures to adjust for
|
||||||
|
distributional differences between lanes (e.g., sequencing depth):
|
||||||
|
global-scaling and full-quantile normalization.")
|
||||||
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
(define htslib-for-sambamba
|
(define htslib-for-sambamba
|
||||||
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
|
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
|
||||||
(package
|
(package
|
||||||
|
Loading…
x
Reference in New Issue
Block a user