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gnu: Add python-pyreadstat.

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* gnu/packages/patches/python-pyreadstat-link-libiconv.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/statistics.scm (python-pyreadstat): New variable.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
Change-Id: I361df91487412e4bfd26fb728a6999752e6343e5
This commit is contained in:
Troy Figiel 2024-01-07 17:40:35 +01:00 committed by Mathieu Othacehe
parent 76470d47c5
commit 185ebc01f6
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GPG Key ID: 8354763531769CA6
3 changed files with 62 additions and 0 deletions
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2
gnu/local.mk
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@ -62,6 +62,7 @@
# Copyright © 2023 B. Wilson <elaexuotee@wilsonb.com>
# Copyright © 2023 gemmaro <gemmaro.dev@gmail.com>
# Copyright © 2023 Herman Rimm <herman@rimm.ee>
# Copyright © 2023 Troy Figiel <troy@troyfigiel.com>
#
# This file is part of GNU Guix.
#
@ -1777,6 +1778,7 @@ dist_patch_DATA = \
%D%/packages/patches/python-louvain-fix-test.patch \
%D%/packages/patches/python-random2-getrandbits-test.patch \
%D%/packages/patches/python-poppler-qt5-fix-build.patch \
%D%/packages/patches/python-pyreadstat-link-libiconv.patch \
%D%/packages/patches/python-pypdf-annotate-tests-appropriately.patch \
%D%/packages/patches/python-pytorch2-system-libraries.patch \
%D%/packages/patches/python-sip-include-dirs.patch \

15
gnu/packages/patches/python-pyreadstat-link-libiconv.patch Normal file
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@ -0,0 +1,15 @@
To ensure libiconv can be found by Guix, we need to link the library.
--- a/setup.py
+++ b/setup.py
@@ -81,8 +81,7 @@ else:
libraries.extend(["m", "z"])
_platform = sys.platform
# Mac: iconv needs to be linked statically
- if _platform.lower().startswith("darwin"):
- libraries.append("iconv")
+ libraries.append("iconv")
# Extensions
sources.sort()

45
gnu/packages/statistics.scm
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@ -18,6 +18,7 @@
;;; Copyright © 2021 Frank Pursel <frank.pursel@gmail.com>
;;; Copyright © 2022 Simon Tournier <zimon.toutoune@gmail.com>
;;; Copyright © 2023 gemmaro <gemmaro.dev@gmail.com>
;;; Copyright © 2023 Troy Figiel <troy@troyfigiel.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -6919,6 +6920,50 @@ files, including Rmarkdown files.")
popular stats packages like SAS, Stata and SPSS.")
(license license:expat)))
(define-public python-pyreadstat
(package
(name "python-pyreadstat")
(version "1.2.4")
;; No tests in the PyPI tarball.
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/Roche/pyreadstat")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32 "0zysrzixvqw2lwwykxqg5yj8a0zyv5s2bmk22x30f4rj2hgvq1pv"))
(patches (search-patches "python-pyreadstat-link-libiconv.patch"))))
(arguments
'(#:phases (modify-phases %standard-phases
(add-before 'check 'change-home-dir
(lambda _
;; test_sav_expand and test_sav_write_basic_expanduser need a
;; home directory with write permissions.
(setenv "HOME" "/tmp")))
(replace 'check
(lambda* (#:key tests? #:allow-other-keys)
(when tests?
;; The source also contains tests/test_version.py
;; which checks the version in __init__.py against the
;; one in setup.py. Since this requires texlive
;; dependencies to run and is also not mentioned in
;; how_to_test.md, this test is skipped.
(invoke "python" "tests/test_basic.py")))))))
(build-system python-build-system)
(propagated-inputs (list python-pandas))
(inputs (list libiconv zlib))
(native-inputs (list python-cython-3))
(home-page "https://github.com/Roche/pyreadstat")
(synopsis
"Read and write SAS, SPSS and Stata files into/from Pandas DataFrames")
(description
"This Python package can be used to read and write SAS, SPSS and Stata
files into/from Pandas DataFrames. It is a wrapper around the C library
@code{readstat}.")
(license license:asl2.0)))
(define-public r-quantpsyc
(package
(name "r-quantpsyc")