gnu: flair: Add missing R packages.
* gnu/packages/bioinformatics.scm (flair)[propagated-inputs]: Add python-rpy2. [inputs]: Add r-minimal, r-deseq2, r-drimseq, r-ggplot2, r-lazyeval, r-qqman, and r-rlang. [arguments]: Add phase "wrap-executable".
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@ -17043,13 +17043,30 @@ module capable of computing base-level alignments for very large sequences.")
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(lambda _
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(apply invoke "pip" "--no-cache-dir" "--no-input"
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"install" "--no-deps" "--prefix" #$output
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(find-files "dist" "\\.whl$")))))))
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(find-files "dist" "\\.whl$"))))
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(add-after 'install 'wrap-executable
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(lambda _
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(for-each
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(lambda (script)
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(wrap-program script
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`("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))
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(find-files (string-append #$output "/bin"))))))))
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(propagated-inputs
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(list python-mappy
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python-ncls
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python-pybedtools
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python-pysam
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python-rpy2
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python-tqdm))
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;; Used by rpy2
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(inputs
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(list r-minimal ;for R_LIBS_SITE
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r-deseq2 ;for runDE
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r-drimseq ;for runDS
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r-ggplot2 ;runDS, runDU
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r-lazyeval ;for rpy2
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r-qqman ;for runDE
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r-rlang)) ;for rpy2
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(native-inputs
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(list python-pypa-build python-setuptools))
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(home-page "https://flair.readthedocs.io/en/latest/")
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