gnu: r-scran: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-scran): Move from here... * gnu/packages/bioconductor.scm (r-scran): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
parent
8c7c6db408
commit
1193b77e60
@ -8347,6 +8347,49 @@ routines.")
|
|||||||
objects from the @code{graph} package.")
|
objects from the @code{graph} package.")
|
||||||
(license license:epl1.0)))
|
(license license:epl1.0)))
|
||||||
|
|
||||||
|
(define-public r-scran
|
||||||
|
(package
|
||||||
|
(name "r-scran")
|
||||||
|
(version "1.16.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "scran" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"))))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-beachmat" ,r-beachmat)
|
||||||
|
("r-bh" ,r-bh)
|
||||||
|
("r-biocgenerics" ,r-biocgenerics)
|
||||||
|
("r-biocneighbors" ,r-biocneighbors)
|
||||||
|
("r-biocparallel" ,r-biocparallel)
|
||||||
|
("r-biocsingular" ,r-biocsingular)
|
||||||
|
("r-delayedarray" ,r-delayedarray)
|
||||||
|
("r-delayedmatrixstats" ,r-delayedmatrixstats)
|
||||||
|
("r-dqrng" ,r-dqrng)
|
||||||
|
("r-edger" ,r-edger)
|
||||||
|
("r-igraph" ,r-igraph)
|
||||||
|
("r-iranges" ,r-iranges)
|
||||||
|
("r-limma" ,r-limma)
|
||||||
|
("r-matrix" ,r-matrix)
|
||||||
|
("r-rcpp" ,r-rcpp)
|
||||||
|
("r-s4vectors" ,r-s4vectors)
|
||||||
|
("r-scater" ,r-scater)
|
||||||
|
("r-singlecellexperiment" ,r-singlecellexperiment)
|
||||||
|
("r-statmod" ,r-statmod)
|
||||||
|
("r-summarizedexperiment" ,r-summarizedexperiment)))
|
||||||
|
(native-inputs
|
||||||
|
`(("r-knitr" ,r-knitr)))
|
||||||
|
(home-page "https://bioconductor.org/packages/scran")
|
||||||
|
(synopsis "Methods for single-cell RNA-Seq data analysis")
|
||||||
|
(description "This package implements a variety of low-level analyses of
|
||||||
|
single-cell RNA-seq data. Methods are provided for normalization of
|
||||||
|
cell-specific biases, assignment of cell cycle phase, and detection of highly
|
||||||
|
variable and significantly correlated genes.")
|
||||||
|
(license license:gpl3)))
|
||||||
|
|
||||||
(define-public r-delayedmatrixstats
|
(define-public r-delayedmatrixstats
|
||||||
(package
|
(package
|
||||||
(name "r-delayedmatrixstats")
|
(name "r-delayedmatrixstats")
|
||||||
|
@ -10857,49 +10857,6 @@ various analyses of single-cell RNA-seq gene expression data, with a focus on
|
|||||||
quality control.")
|
quality control.")
|
||||||
(license license:gpl2+)))
|
(license license:gpl2+)))
|
||||||
|
|
||||||
(define-public r-scran
|
|
||||||
(package
|
|
||||||
(name "r-scran")
|
|
||||||
(version "1.16.0")
|
|
||||||
(source
|
|
||||||
(origin
|
|
||||||
(method url-fetch)
|
|
||||||
(uri (bioconductor-uri "scran" version))
|
|
||||||
(sha256
|
|
||||||
(base32
|
|
||||||
"1gm4ys4aq8h1pn45k1rxk384wjyf55izivw8kgxbrflj6j4xvvsv"))))
|
|
||||||
(build-system r-build-system)
|
|
||||||
(propagated-inputs
|
|
||||||
`(("r-beachmat" ,r-beachmat)
|
|
||||||
("r-bh" ,r-bh)
|
|
||||||
("r-biocgenerics" ,r-biocgenerics)
|
|
||||||
("r-biocneighbors" ,r-biocneighbors)
|
|
||||||
("r-biocparallel" ,r-biocparallel)
|
|
||||||
("r-biocsingular" ,r-biocsingular)
|
|
||||||
("r-delayedarray" ,r-delayedarray)
|
|
||||||
("r-delayedmatrixstats" ,r-delayedmatrixstats)
|
|
||||||
("r-dqrng" ,r-dqrng)
|
|
||||||
("r-edger" ,r-edger)
|
|
||||||
("r-igraph" ,r-igraph)
|
|
||||||
("r-iranges" ,r-iranges)
|
|
||||||
("r-limma" ,r-limma)
|
|
||||||
("r-matrix" ,r-matrix)
|
|
||||||
("r-rcpp" ,r-rcpp)
|
|
||||||
("r-s4vectors" ,r-s4vectors)
|
|
||||||
("r-scater" ,r-scater)
|
|
||||||
("r-singlecellexperiment" ,r-singlecellexperiment)
|
|
||||||
("r-statmod" ,r-statmod)
|
|
||||||
("r-summarizedexperiment" ,r-summarizedexperiment)))
|
|
||||||
(native-inputs
|
|
||||||
`(("r-knitr" ,r-knitr)))
|
|
||||||
(home-page "https://bioconductor.org/packages/scran")
|
|
||||||
(synopsis "Methods for single-cell RNA-Seq data analysis")
|
|
||||||
(description "This package implements a variety of low-level analyses of
|
|
||||||
single-cell RNA-seq data. Methods are provided for normalization of
|
|
||||||
cell-specific biases, assignment of cell cycle phase, and detection of highly
|
|
||||||
variable and significantly correlated genes.")
|
|
||||||
(license license:gpl3)))
|
|
||||||
|
|
||||||
(define-public r-dropbead
|
(define-public r-dropbead
|
||||||
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
|
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
|
||||||
(revision "2"))
|
(revision "2"))
|
||||||
|
Loading…
x
Reference in New Issue
Block a user