gnu: python-petsc4py: Update to 3.21.4.
* gnu/packages/maths.scm (python-petsc4py): Update to 3.21.4. [source](modules, snippet): Remove. [arguments]: Switch to gexps. Rename ‘pre-build’ phase to ‘set-PETSC_DIR’. Replace ‘check’ phase. [native-inputs]: Switch to ‘python-cython-3’. [inputs]: Remove labels. Change-Id: I2d8ef3519f6ffe93ff761ef99c4b8951b6107e1c
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@ -3738,41 +3738,31 @@ scientific applications modeled by partial differential equations.")
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(define-public python-petsc4py
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(package
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(name "python-petsc4py")
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(version "3.16.1")
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(version "3.21.4")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "petsc4py" version))
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(sha256
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(base32
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"0pxr6qa7p0pmpq0av29lx8lzlrdcfdzj87ynixzr8dn42y13a662"))
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(modules '((guix build utils)))
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(snippet
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'(begin
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;; Ensure source file is regenerated in the build phase.
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(delete-file "src/petsc4py.PETSc.c")
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;; Remove legacy GC code. See
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;; https://bitbucket.org/petsc/petsc4py/issues/125.
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(substitute* "src/PETSc/cyclicgc.pxi"
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((".*gc_refs.*") "" )
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((".*PyGC_Head.*") ""))
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#t))))
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"1kffxhcwkx6283n2p83ymanz6m8j2xmz5kpa5s8qc4f9iiah59sb"))))
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(build-system python-build-system)
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(arguments
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`(#:phases
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(modify-phases %standard-phases
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(add-before 'build 'pre-build
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(lambda _
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;; Define path to PETSc installation.
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(setenv "PETSC_DIR" (assoc-ref %build-inputs "petsc"))
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#t))
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(add-before 'check 'mpi-setup
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,%openmpi-setup))))
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(native-inputs
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(list python-cython))
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(inputs
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`(("petsc" ,petsc-openmpi)
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("python-numpy" ,python-numpy)))
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(list #:phases
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#~(modify-phases %standard-phases
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(add-before 'build 'set-PETSC_DIR
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(lambda* (#:key inputs #:allow-other-keys)
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;; Define path to PETSc installation.
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(setenv "PETSC_DIR"
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(assoc-ref inputs "petsc-openmpi"))))
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(add-before 'check 'mpi-setup
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#$%openmpi-setup)
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(replace 'check
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(lambda* (#:key tests? #:allow-other-keys)
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(when tests?
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(invoke "python" "test/runtests.py")))))))
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(native-inputs (list python-cython-3))
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(inputs (list petsc-openmpi python-numpy))
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(home-page "https://bitbucket.org/petsc/petsc4py/")
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(synopsis "Python bindings for PETSc")
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(description "PETSc, the Portable, Extensible Toolkit for
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