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gnu: petsc: Update to 3.16.1.

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* gnu/packages/maths.scm (petsc): Update to 3.16.1.
[native-inputs]: Use PYTHON instead of PYTHON-2.  Add WHICH.
[arguments]: Rewrite using gexps.  Pass '--with-openblas-dir'.  In
'configure' phase, modify "config/example_template.py".
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Ludovic Courtès 2021-11-28 23:54:31 +01:00
parent 57b62e5bb9
commit 07ac13a26a
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1 changed files with 78 additions and 72 deletions
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gnu/packages/maths.scm
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@ -2870,7 +2870,7 @@ September 2004}")
(define-public petsc
(package
(name "petsc")
(version "3.11.2")
(version "3.16.1")
(source
(origin
(method url-fetch)
@ -2878,12 +2878,13 @@ September 2004}")
(uri (string-append "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/"
"petsc-lite-" version ".tar.gz"))
(sha256
(base32 "1645nwwcp9bcnfnxikk480mhbbacdvhsay2c401818hk97dqj5nx"))))
(base32 "0sm03vpg010q9icidiq587n325m0598cj6hab2rdv85nwyygg74h"))))
(outputs '("out" ; libraries and headers
"examples")) ; ~30MiB of examples
(build-system gnu-build-system)
(native-inputs
`(("python" ,python-2)))
`(("python" ,python)
("which" ,which)))
(inputs
`(("gfortran" ,gfortran)
("openblas" ,openblas)
@ -2892,19 +2893,22 @@ September 2004}")
;; leaving out opengl, as configuration seems to only be for mac
))
(arguments
`(#:test-target "test"
(list
#:test-target "test"
#:parallel-build? #f ; build is parallel by default
#:configure-flags
`("--with-mpi=0"
#~(list "--with-mpi=0"
"--with-openmp=1"
"--with-openblas=1"
(string-append "--with-openblas-dir="
#$(this-package-input "openblas"))
"--with-superlu=1")
#:make-flags
;; Honor (parallel-job-count) for build. Do not use --with-make-np,
;; whose value is dumped to $out/lib/petsc/conf/petscvariables.
(list (format #f "MAKE_NP=~a" (parallel-job-count)))
#~(list (format #f "MAKE_NP=~a" (parallel-job-count)))
#:phases
(modify-phases %standard-phases
#~(modify-phases %standard-phases
(replace 'configure
;; PETSc's configure script is actually a python script, so we can't
;; run it with bash.
@ -2915,7 +2919,12 @@ September 2004}")
,@configure-flags)))
(format #t "build directory: ~s~%" (getcwd))
(format #t "configure flags: ~s~%" flags)
(apply invoke "./configure" flags))))
(apply invoke "./configure" flags)
;; Generate test scripts with the right shebang.
(substitute* "config/example_template.py"
(("#!/usr/bin/env bash")
(string-append "#!" (which "bash")))))))
(add-after 'configure 'clean-local-references
(lambda* (#:key outputs #:allow-other-keys)
(let ((out (assoc-ref outputs "out")))
@ -2927,8 +2936,7 @@ September 2004}")
(substitute* (find-files "." "petscvariables")
;; Do not expose build machine characteristics, set to defaults.
(("MAKE_NP = [:digit:]+") "MAKE_NP = 2")
(("NPMAX = [:digit:]+") "NPMAX = 2"))
#t)))
(("NPMAX = [:digit:]+") "NPMAX = 2")))))
(add-after 'install 'clean-install
;; Try to keep installed files from leaking build directory names.
(lambda* (#:key inputs outputs #:allow-other-keys)
@ -2950,8 +2958,7 @@ September 2004}")
"test.log" "error.log" "RDict.db"
"PETScBuildInternal.cmake"
;; Once installed, should uninstall with Guix
"uninstall.py"))
#t)))
"uninstall.py")))))
(add-after 'install 'move-examples
(lambda* (#:key outputs #:allow-other-keys)
(let* ((out (assoc-ref outputs "out"))
@ -2959,8 +2966,7 @@ September 2004}")
(exdir (string-append out "/share/petsc/examples"))
(exdir' (string-append examples "/share/petsc/examples")))
(copy-recursively exdir exdir')
(delete-file-recursively exdir)
#t))))))
(delete-file-recursively exdir)))))))
(home-page "https://www.mcs.anl.gov/petsc")
(synopsis "Library to solve PDEs")
(description "PETSc, pronounced PET-see (the S is silent), is a suite of