gnu: Add python-scanorama.
* gnu/packages/bioinformatics.scm (python-scanorama): New variable.
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@ -12475,6 +12475,35 @@ cooler). Both @code{hic} and @code{cool} files describe Hi-C contact
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matrices.")
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matrices.")
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(license license:expat)))
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(license license:expat)))
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(define-public python-scanorama
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(package
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(name "python-scanorama")
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(version "1.7.2")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "scanorama" version))
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(sha256
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(base32
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"0il7bf4c7vli2dm2jx7dskh3ymgv8nmk0y90jzgfrnqjzh250x5w"))))
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(build-system python-build-system)
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(propagated-inputs
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(list python-annoy
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python-fbpca
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python-geosketch
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python-intervaltree
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python-matplotlib
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python-numpy
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python-scikit-learn
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python-scipy))
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(home-page "https://github.com/brianhie/scanorama")
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(synopsis "Panoramic stitching of heterogeneous single cell transcriptomic data")
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(description
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"Scanorama enables batch-correction and integration of heterogeneous
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scRNA-seq datasets, which is described in the paper \"Efficient integration of
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heterogeneous single-cell transcriptomes using Scanorama\" by Brian Hie, Bryan
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Bryson, and Bonnie Berger.")
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(license license:expat)))
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(define-public r-pore
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(define-public r-pore
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(package
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(package
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(name "r-pore")
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(name "r-pore")
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