gnu: Add python-scanorama.

* gnu/packages/bioinformatics.scm (python-scanorama): New variable.
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Ricardo Wurmus 2022-08-02 14:35:42 +02:00
parent c69c2c1c4d
commit 03858a7908
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@ -12475,6 +12475,35 @@ cooler). Both @code{hic} and @code{cool} files describe Hi-C contact
matrices.") matrices.")
(license license:expat))) (license license:expat)))
(define-public python-scanorama
(package
(name "python-scanorama")
(version "1.7.2")
(source (origin
(method url-fetch)
(uri (pypi-uri "scanorama" version))
(sha256
(base32
"0il7bf4c7vli2dm2jx7dskh3ymgv8nmk0y90jzgfrnqjzh250x5w"))))
(build-system python-build-system)
(propagated-inputs
(list python-annoy
python-fbpca
python-geosketch
python-intervaltree
python-matplotlib
python-numpy
python-scikit-learn
python-scipy))
(home-page "https://github.com/brianhie/scanorama")
(synopsis "Panoramic stitching of heterogeneous single cell transcriptomic data")
(description
"Scanorama enables batch-correction and integration of heterogeneous
scRNA-seq datasets, which is described in the paper \"Efficient integration of
heterogeneous single-cell transcriptomes using Scanorama\" by Brian Hie, Bryan
Bryson, and Bonnie Berger.")
(license license:expat)))
(define-public r-pore (define-public r-pore
(package (package
(name "r-pore") (name "r-pore")