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gnu: gemmi: Update to 0.6.4.

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* gnu/packages/chemistry.scm (gemmi): Update to 0.6.4.
[arguments]: Adjust include/gemmi/sprintf.hpp -> src/sprintf.cpp.
(freesasa)[arguments]: Link to gemmi_cpp explicitly.

Signed-off-by: Christopher Baines <mail@cbaines.net>
This commit is contained in:
David Elsing 2024-01-28 23:01:56 +00:00 committed by Christopher Baines
parent 24518d038b
commit 01ec7c3883
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GPG Key ID: 5E28A33B0B84F577
1 changed files with 4 additions and 4 deletions
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8
gnu/packages/chemistry.scm
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@ -589,7 +589,7 @@ your colleagues, or to generate pre-rendered animations.")
(define-public gemmi
(package
(name "gemmi")
(version "0.5.7")
(version "0.6.4")
(source (origin
(method git-fetch)
(uri (git-reference
@ -598,7 +598,7 @@ your colleagues, or to generate pre-rendered animations.")
(file-name (git-file-name name version))
(sha256
(base32
"00km5q726bslrw7xbfwb3f3mrsk19qbimfnl3hvr4wi1y3z8i18a"))
"0wciqqswc4p4v4kglfv36gnvyyimqn4lnywdzd0pgrjn443i860y"))
(patches
(search-patches "gemmi-fix-sajson-types.patch"
"gemmi-fix-pegtl-usage.patch"))
@ -625,7 +625,7 @@ your colleagues, or to generate pre-rendered animations.")
#~(modify-phases %standard-phases
(add-after 'unpack 'patch-includes
(lambda _
(substitute* (list "include/gemmi/sprintf.hpp"
(substitute* (list "src/sprintf.cpp"
"include/gemmi/dirwalk.hpp"
"include/gemmi/cif.hpp"
"include/gemmi/json.hpp"
@ -722,7 +722,7 @@ It can be used for working with
(("libfreesasa\\.a") "libfreesasa.la")
(("freesasa_LDADD \\+= libfreesasa\\.la" prev)
(string-append prev "\nlibfreesasa_la_LIBADD"
" = -ljson-c ${libxml2_LIBS}\n"))
" = -ljson-c -lgemmi_cpp ${libxml2_LIBS}\n"))
(("_a_SOURCES") "_la_SOURCES"))
(substitute* "configure.ac"
(("AC_PROG_INSTALL" inst)