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openbsd-ports/math/mcsim/patches/patch-sim_Test_mcsim
reinhard e4ae05eaea MCSim is a general purpose modeling and simulation program which 
also performs standart or Monte Carlo simulations. It allows you
to specify a set of linear or nonlinear equations and solve them
using parameter values you choose or parameter values sampled
from specified statistical distributions. Outputs can be compared.
 
It consists of two pieces - a model generator and a simulation
engine. The model generator was created to facilitate the model
maintenance and simulation definition, while keeping execution
time fast. Other programs have been created to the same end, the
Matlab family of graphical interactive programs being some of the
more general and easy to use.

MAINTAINER=     Peter Valchev <pvalchev@toxiclinux.org>
2001-01-19 15:24:58 +00:00

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$OpenBSD: patch-sim_Test_mcsim,v 1.1.1.1 2001/01/19 15:24:58 reinhard Exp $
--- sim/Test_mcsim.orig Fri Nov 14 15:45:56 1997
+++ sim/Test_mcsim Sun Jan 14 17:41:45 2001
@@ -1,147 +1,147 @@
# Run diagnostic tests on several features of the program.
# results are compared to prepared files.
-one:
- @echo
- @echo ----------
- @echo
- @echo '* Testing MCSim: this could take a few minutes.'
- @echo '* Creating logfile mcsim.log'
- @touch mcsim.log
- @date >> mcsim.log
-#
- @echo
- @echo ----------
- @echo
- @echo Testing with the tetrachloroethylene model
- @mod perc.model
- @gcc -I . -Wall -ansi -c model.c -o model.o > /dev/null
- @gcc -o mcsim *.o -lm
- @echo
+#one:
+ echo
+ echo ----------
+ echo
+ echo '* Testing MCSim: this could take a few minutes.'
+ echo '* Creating logfile mcsim.log'
+ touch mcsim.log
+ date >> mcsim.log
+#
+ echo
+ echo ----------
+ echo
+ echo Testing with the tetrachloroethylene model
+ ../mod/mod perc.model
+ cc -I . -Wall -ansi -c model.c -o model.o > /dev/null
+ cc -o mcsim *.o -lm
+ echo
#
# perc.lsodes.in
- @echo Testing Lsodes with perc.lsodes.in ...
- @chmod -w perc.lsodes.in perc.lsodes.out
- @mcsim perc.lsodes.in sim.out >> mcsim.log
- @(diff sim.out perc.lsodes.out > .tmp) && echo '-PASSED-'
+ echo Testing Lsodes with perc.lsodes.in ...
+ chmod -w perc.lsodes.in perc.lsodes.out
+ ./mcsim perc.lsodes.in sim.out >> mcsim.log
+ (diff sim.out perc.lsodes.out > .tmp) && echo '-PASSED-'
#
# perc.ndoses.in
- @echo Testing NDoses with perc.ndoses.in ...
- @chmod -w perc.ndoses.in perc.ndoses.out
- @mcsim perc.ndoses.in sim.out >> mcsim.log
- @(diff sim.out perc.ndoses.out > .tmp) && echo '-PASSED-'
+ echo Testing NDoses with perc.ndoses.in ...
+ chmod -w perc.ndoses.in perc.ndoses.out
+ ./mcsim perc.ndoses.in sim.out >> mcsim.log
+ (diff sim.out perc.ndoses.out > .tmp) && echo '-PASSED-'
#
# perc.mtc.in
- @echo Testing Monte Carlo with perc.mtc.in ...
- @chmod -w perc.mtc.in perc.mtc.out
- @mcsim perc.mtc.in sim.out >> mcsim.log
- @(diff sim.out perc.mtc.out > .tmp) && echo '-PASSED-'
+ echo Testing Monte Carlo with perc.mtc.in ...
+ chmod -w perc.mtc.in perc.mtc.out
+ ./mcsim perc.mtc.in sim.out >> mcsim.log
+ (diff sim.out perc.mtc.out > .tmp) && echo '-PASSED-'
#
# perc.setpoint.in
- @echo Testing Set Point run with perc.setpoint.in ...
- @chmod -w perc.setpoint.dat perc.setpoint.in perc.setpoint.out
- @mcsim perc.setpoint.in sim.out >> mcsim.log
- @(diff sim.out perc.setpoint.out > .tmp) && echo '-PASSED-'
-#
- @echo
- @echo ----------
- @echo
- @echo Testing with the 1 compartment model
- @mod 1cpt.model
- @gcc -I . -Wall -ansi -c model.c -o model.o > /dev/null
- @gcc -o mcsim *.o -lm
- @echo
+ echo Testing Set Point run with perc.setpoint.in ...
+ chmod -w perc.setpoint.dat perc.setpoint.in perc.setpoint.out
+ ./mcsim perc.setpoint.in sim.out >> mcsim.log
+ (diff sim.out perc.setpoint.out > .tmp) && echo '-PASSED-'
+#
+ echo
+ echo ----------
+ echo
+ echo Testing with the 1 compartment model
+ ../mod/mod 1cpt.model
+ cc -I . -Wall -ansi -c model.c -o model.o > /dev/null
+ cc -o mcsim *.o -lm
+ echo
#
# 1cpt_no_noise.in
- @echo Testing Lsodes non random output with 1cpt_no_noise.in ...
- @chmod -w 1cpt_no_noise.in 1cpt_no_noise.out
- @mcsim 1cpt_no_noise.in sim.out >> mcsim.log
- @(diff sim.out 1cpt_no_noise.out > .tmp) && echo '-PASSED-'
+ echo Testing Lsodes non random output with 1cpt_no_noise.in ...
+ chmod -w 1cpt_no_noise.in 1cpt_no_noise.out
+ ./mcsim 1cpt_no_noise.in sim.out >> mcsim.log
+ (diff sim.out 1cpt_no_noise.out > .tmp) && echo '-PASSED-'
#
# 1cpt_w._noise.in
- @echo Testing Lsodes randomized output with 1cpt_w._noise.in ...
- @chmod -w 1cpt_w._noise.in 1cpt_w._noise.out
- @mcsim 1cpt_w._noise.in sim.out >> mcsim.log
- @(diff sim.out 1cpt_w._noise.out > .tmp) && echo '-PASSED-'
+ echo Testing Lsodes randomized output with 1cpt_w._noise.in ...
+ chmod -w 1cpt_w._noise.in 1cpt_w._noise.out
+ ./mcsim 1cpt_w._noise.in sim.out >> mcsim.log
+ (diff sim.out 1cpt_w._noise.out > .tmp) && echo '-PASSED-'
#
# 1cpt.MCMC1.in
- @echo Testing MCMC set uncertainties with 1cpt.MCMC1.in ...
- @chmod -w 1cpt.MCMC1.in 1cpt.MCMC1.out
- @mcsim 1cpt.MCMC1.in sim.out >> mcsim.log
- @(diff sim.out 1cpt.MCMC1.out > .tmp) && echo '-PASSED-'
+ echo Testing MCMC set uncertainties with 1cpt.MCMC1.in ...
+ chmod -w 1cpt.MCMC1.in 1cpt.MCMC1.out
+ ./mcsim 1cpt.MCMC1.in sim.out >> mcsim.log
+ (diff sim.out 1cpt.MCMC1.out > .tmp) && echo '-PASSED-'
#
# 1cpt.MCMC2.in
- @echo Testing MCMC estimated uncertainties with 1cpt.MCMC2.in ...
- @chmod -w 1cpt.MCMC2.in 1cpt.MCMC2.out
- @mcsim 1cpt.MCMC2.in sim.out >> mcsim.log
- @(diff sim.out 1cpt.MCMC2.out > .tmp) && echo '-PASSED-'
+ echo Testing MCMC estimated uncertainties with 1cpt.MCMC2.in ...
+ chmod -w 1cpt.MCMC2.in 1cpt.MCMC2.out
+ ./mcsim 1cpt.MCMC2.in sim.out >> mcsim.log
+ (diff sim.out 1cpt.MCMC2.out > .tmp) && echo '-PASSED-'
#
# 1cpt.MCMC3.in
- @echo Testing MCMC print every 2 iterations with 1cpt.MCMC3.in ...
- @chmod -w 1cpt.MCMC3.in 1cpt.MCMC3.out
- @mcsim 1cpt.MCMC3.in sim.out >> mcsim.log
- @(diff sim.out 1cpt.MCMC3.out > .tmp) && echo '-PASSED-'
+ echo Testing MCMC print every 2 iterations with 1cpt.MCMC3.in ...
+ chmod -w 1cpt.MCMC3.in 1cpt.MCMC3.out
+ ./mcsim 1cpt.MCMC3.in sim.out >> mcsim.log
+ (diff sim.out 1cpt.MCMC3.out > .tmp) && echo '-PASSED-'
#
# 1cpt.MCMC4.in
- @echo Testing MCMC estimated bounds on F with 1cpt.MCMC4.in ...
- @chmod -w 1cpt.MCMC4.in 1cpt.MCMC4.out
- @mcsim 1cpt.MCMC4.in sim.out >> mcsim.log
- @(diff sim.out 1cpt.MCMC4.out > .tmp) && echo '-PASSED-'
+ echo Testing MCMC estimated bounds on F with 1cpt.MCMC4.in ...
+ chmod -w 1cpt.MCMC4.in 1cpt.MCMC4.out
+ ./mcsim 1cpt.MCMC4.in sim.out >> mcsim.log
+ (diff sim.out 1cpt.MCMC4.out > .tmp) && echo '-PASSED-'
#
# 1cpt.MCMC5.in
- @echo Testing MCMC model-computed SDs with 1cpt.MCMC5.in ...
- @chmod -w 1cpt.MCMC5.in 1cpt.MCMC5.out
- @mcsim 1cpt.MCMC5.in sim.out >> mcsim.log
- @(diff sim.out 1cpt.MCMC5.out > .tmp) && echo '-PASSED-'
-#
- @echo
- @echo ----------
- @echo
- @echo Testing with the linear model
- @mod linear.model
- @gcc -I . -Wall -ansi -c model.c -o model.o > /dev/null
- @gcc -o mcsim *.o -lm
- @echo
+ echo Testing MCMC model-computed SDs with 1cpt.MCMC5.in ...
+ chmod -w 1cpt.MCMC5.in 1cpt.MCMC5.out
+ ./mcsim 1cpt.MCMC5.in sim.out >> mcsim.log
+ (diff sim.out 1cpt.MCMC5.out > .tmp) && echo '-PASSED-'
+#
+ echo
+ echo ----------
+ echo
+ echo Testing with the linear model
+ ../mod/mod linear.model
+ cc -I . -Wall -ansi -c model.c -o model.o > /dev/null
+ cc -o mcsim *.o -lm
+ echo
#
# linear.in
- @echo Testing Lsodes with linear.in ...
- @chmod -w linear.in linear.out
- @mcsim linear.in sim.out >> mcsim.log
- @(diff sim.out linear.out > .tmp) && echo '-PASSED-'
+ echo Testing Lsodes with linear.in ...
+ chmod -w linear.in linear.out
+ ./mcsim linear.in sim.out >> mcsim.log
+ (diff sim.out linear.out > .tmp) && echo '-PASSED-'
#
# linear.MCMC1.in
- @echo Testing MCMC 1 experiment with linear.MCMC1.in ...
- @chmod -w linear.MCMC1.in linear.MCMC1.out
- @mcsim linear.MCMC1.in sim.out >> mcsim.log
- @(diff sim.out linear.MCMC1.out > .tmp) && echo '-PASSED-'
+ echo Testing MCMC 1 experiment with linear.MCMC1.in ...
+ chmod -w linear.MCMC1.in linear.MCMC1.out
+ ./mcsim linear.MCMC1.in sim.out >> mcsim.log
+ (diff sim.out linear.MCMC1.out > .tmp) && echo '-PASSED-'
#
# linear.MCMC2.in
- @echo Testing MCMC 1 repeated experiment with linear.MCMC2.in ...
- @chmod -w linear.MCMC2.in linear.MCMC2.out
- @mcsim linear.MCMC2.in sim.out >> mcsim.log
- @(diff sim.out linear.MCMC2.out > .tmp) && echo '-PASSED-'
+ echo Testing MCMC 1 repeated experiment with linear.MCMC2.in ...
+ chmod -w linear.MCMC2.in linear.MCMC2.out
+ ./mcsim linear.MCMC2.in sim.out >> mcsim.log
+ (diff sim.out linear.MCMC2.out > .tmp) && echo '-PASSED-'
#
# linear.H.MCMC1.in
- @echo Testing MCMC hierarchical linear model, 10 exps with \
+ echo Testing MCMC hierarchical linear model, 10 exps with \
linear.H.MCMC1.in ...
- @chmod -w linear.H.MCMC1.in linear.H.MCMC1.out
- @mcsim linear.H.MCMC1.in sim.out >> mcsim.log
- @(diff sim.out linear.H.MCMC1.out > .tmp) && echo '-PASSED-'
+ chmod -w linear.H.MCMC1.in linear.H.MCMC1.out
+ ./mcsim linear.H.MCMC1.in sim.out >> mcsim.log
+ (diff sim.out linear.H.MCMC1.out > .tmp) && echo '-PASSED-'
#
# linear.H.MCMC2.in
- @echo Testing MCMC hierarchical linear model, B1.1 set with \
+ echo Testing MCMC hierarchical linear model, B1.1 set with \
linear.H.MCMC2.in
- @chmod -w linear.H.MCMC2.in linear.H.MCMC2.out
- @mcsim linear.H.MCMC2.in sim.out >> mcsim.log
- @(diff sim.out linear.H.MCMC2.out > .tmp) && echo '-PASSED-'
+ chmod -w linear.H.MCMC2.in linear.H.MCMC2.out
+ ./mcsim linear.H.MCMC2.in sim.out >> mcsim.log
+ (diff sim.out linear.H.MCMC2.out > .tmp) && echo '-PASSED-'
#
# linear.H.MCMC3.in
- @echo Testing MCMC hierarchical model, restart file with \
+ echo Testing MCMC hierarchical model, restart file with \
linear.H.MCMC3.in
- @chmod -w linear.H.MCMC3.in linear.H.MCMC3.out
- @mcsim linear.H.MCMC3.in sim.out >> mcsim.log
- @(diff sim.out linear.H.MCMC3.out > .tmp) && echo '-PASSED-'
-#
- @echo
- @echo Hourra!
- @echo MCSim passed all tests.
+ chmod -w linear.H.MCMC3.in linear.H.MCMC3.out
+ ./mcsim linear.H.MCMC3.in sim.out >> mcsim.log
+ (diff sim.out linear.H.MCMC3.out > .tmp) && echo '-PASSED-'
+#
+ echo
+ echo Yaba-daba-doo!
+ echo MCSim passed all tests!
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