31 lines
1.2 KiB
Plaintext
31 lines
1.2 KiB
Plaintext
$OpenBSD: patch-setup_py,v 1.5 2008/01/12 02:00:24 okan Exp $
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--- setup.py.orig Sat Oct 27 02:11:01 2007
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+++ setup.py Fri Dec 21 16:56:57 2007
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@@ -65,6 +65,14 @@ def check_dependencies_once():
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return _CHECKED
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def check_dependencies():
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+ NUMPY_PACKAGES.append("Bio.KDTree")
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+ NUMPY_EXTENSIONS.append(
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+ CplusplusExtension('Bio.KDTree._CKDTree',
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+ ["Bio/KDTree/KDTree.cpp",
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+ "Bio/KDTree/KDTree.swig.cpp"],
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+ libraries=["stdc++"],
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+ language="c++"))
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+ return 1
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"""Return whether the installation should continue."""
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# There should be some way for the user to tell specify not to
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# check dependencies. For example, it probably should not if
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@@ -285,7 +293,10 @@ def is_Martel_installed():
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bundled_martel_version = m.__version__
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else:
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bundled_martel_version = None
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- del sys.modules["Martel"] # Delete the old version of Martel.
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+ try:
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+ del sys.modules["Martel"] # Delete the old version of Martel.
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+ except:
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+ pass
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# Now try and import a Martel that's not bundled with Biopython.
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# To do that, I need to delete all the references to the current
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