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openbsd-ports/math
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martin 1ffe8cd980 Update h5py to 3.5.0. 
incorporate improvements by bket@:
- skip tests related to mpi_file_name
- fix free() related segfault in lzf_filter
- prepare the port for newer numpy/Cython/python versions
- run tests in fake

OK bket@
2021-10-24 11:43:54 +00:00
..
4ti2
Fix typo in MAINTAINER name; from MAINTAINER.
2020-07-18 18:11:03 +00:00
aamath
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
armadillo
Update armadillo to 9.900.4.
2020-12-11 12:40:44 +00:00
arpack
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
bc-gh
Update to bc-gh-5.1.1
2021-10-08 03:15:08 +00:00
bcal
Reverse the polarity of MODPY_VERSION; default is now 3.x,
2021-02-23 19:39:08 +00:00
blas
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
calc
update to calc-2.14.0.3
2021-10-03 19:20:31 +00:00
calcoo
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
cblas
Register libcblas.so dependency on libblas.so
2020-03-13 13:36:42 +00:00
cddlib
Update cddlib to 0.94m. shlib patch is no longer required.
2020-12-11 12:38:20 +00:00
cfitsio
remove bogus www/nghttp2 LIB_DEPENDS
2019-11-03 14:12:35 +00:00
cgal
Update CGAL to 4.14.2 (Switch from Qt4 to Qt5)
2020-02-04 06:09:02 +00:00
coq
update to coq 8.12.2; ok Yozo Toda (MAINTAINER)
2021-02-13 17:47:48 +00:00
dieharder
math/dieharder: Fix build by passing -fcommon
2021-02-02 19:27:50 +00:00
double-conversion
double-conversion: ${COMPILER_LIBCXX} in WANTLIB should come with a
2019-10-18 10:39:09 +00:00
ecm
Update to ecm-7.0.4.
2019-07-01 09:49:43 +00:00
eigen3
Remove Qt4 dependency.
2020-01-26 07:30:15 +00:00
ensmallen
update to newer mlpack and dependencies
2019-10-28 15:13:35 +00:00
fann
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
fftw
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
fftw3
Fix the subpackaging: The *.cmake files are not shared between the flavors;
2019-10-03 16:49:10 +00:00
foma
Update to foma 0.9.18.20200928
2021-02-19 02:13:02 +00:00
galculator
math/galculator: zap duplicate definition to fix build with -fno-common
2021-01-28 20:12:13 +00:00
gbc
Add fixes for -fno-common
2021-01-31 04:09:38 +00:00
geogebra
Bump revision on all 1.8+ ports since now they will build with jdk
2021-05-19 01:50:29 +00:00
ginac
Reverse the polarity of MODPY_VERSION; default is now 3.x,
2021-02-23 19:39:08 +00:00
gnumeric
Update to gnumeric-1.12.50.
2021-06-12 10:34:18 +00:00
gnuplot
Bump after MAINTAINER update.
2020-04-06 08:48:06 +00:00
grace
grace: update to 5.1.25
2020-05-17 23:04:49 +00:00
graphviz
bump after previous
2020-01-11 12:27:39 +00:00
grpn
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
gunits
gunits changed in 2.15 (2017) to no longer use py-unidecode, and instead
2021-10-22 19:29:20 +00:00
hc
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
hdf5
Update hdf5 to 1.12.0:
2020-12-02 13:27:54 +00:00
hexcalc
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
hoc
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
imath
Update to Imath-3.1.3.
2021-09-03 07:09:23 +00:00
isl
fix variable name: SEPERATE_BUILD -> SEPARATE_BUILD
2021-10-14 07:15:32 +00:00
jacal
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
kst
Fix wrong cmake if-else-fu, unbreak with upcoming cmake
2021-04-24 04:34:26 +00:00
lapack
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
lean
import math/lean, ok sthen
2021-08-16 20:19:23 +00:00
libcerf
Bump after MAINTAINER update.
2020-04-06 08:48:06 +00:00
libqalculate
update to libqalculate/qalc-3.20.1
2021-09-02 13:30:57 +00:00
libtommath
Update libtommath to 1.2.0
2021-03-11 06:29:21 +00:00
lpsolve
adapt a few ports to the numpy python2/python3 port split
2021-06-14 01:02:27 +00:00
lrs
math/lrs tweaks, ok edd@, works for maintainer
2020-11-21 14:13:06 +00:00
mathomatic
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
matio
Fix build for matio on sparc64 by making it use ports-gcc rather
2020-11-23 14:32:51 +00:00
maxima
Reverse the polarity of MODPY_VERSION; default is now 3.x,
2021-02-23 19:39:08 +00:00
mcl
math/mcl: avoid printf %n, switch HOMEPAGE and MASTER_SITES to https
2021-09-15 21:55:07 +00:00
mcsim
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
minisat
drop maintainership for a bunch of ports i haven't used in years
2019-11-03 14:07:41 +00:00
mlpack
math/mlpack has been broken for a long time
2021-05-24 02:10:06 +00:00
moo
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
muparser
Import muparser 2.2.6.1
2019-08-14 12:01:38 +00:00
netcdf
remove ports libexecinfo, we now have a libunwind-based libexecinfo in base
2021-06-09 19:50:06 +00:00
nlopt
Update to nlopt-2.7.0.
2020-12-30 14:37:54 +00:00
nonogram
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
nonolib
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
ntl
Update to ntl-11.5.1.
2021-06-25 07:08:19 +00:00
ocaml-num
update to ocaml-num 1.4
2020-11-22 21:30:15 +00:00
ocaml-zarith
update to ocaml-zarith 1.11
2020-11-22 21:30:43 +00:00
octave
bump for plist changes 6.9 -> 7.0
2021-08-17 20:22:02 +00:00
openfst
Fix build on i386. Compile with SSE2 on i386 (flags: -msse -msse2 -mfpmath=sse)
2021-09-11 09:44:46 +00:00
p5-AI-FANN
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-AI-NeuralNet-BackProp
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-AI-NeuralNet-Kohonen
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-AI-NeuralNet-Kohonen-Visual
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-AI-NeuralNet-Mesh
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-AI-Perceptron
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Algorithm-Combinatorics
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Algorithm-NaiveBayes
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Bit-Vector
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Business-Hours
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Chart-Math-Axis
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Data-PowerSet
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-GraphViz
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Base36
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Base85
Update to p5-Math-Base85-0.5.
2020-12-16 05:36:27 +00:00
p5-Math-BaseCnv
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Bezier
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-BigInt-GMP
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Calc-Units
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Derivative
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-FFT
Update to p5-Math-FFT-1.36.
2020-11-01 10:30:50 +00:00
p5-Math-Fibonacci
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Fibonacci-Phi
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-GMP
Update to p5-Math-GMP-2.20.
2020-11-11 09:21:25 +00:00
p5-Math-GMPf
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-GMPz
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Int64
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Int128
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-MatrixReal
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Prime-Util
Import math/p5-Math-Prime-Util
2020-08-13 03:03:11 +00:00
p5-Math-Prime-Util-GMP
Import math/p5-Math-Prime-Util-GMP
2020-08-13 03:02:20 +00:00
p5-Math-Random-ISAAC
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Round
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Spline
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-Symbolic
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-SymbolicX-ParserExtensionFactory
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
p5-Math-Utils
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Math-VecStat
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Number-WithError
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Set-IntSpan
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Statistics-CaseResampling
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Statistics-Contingency
bump for search.cpan.org->metacpan.org change
2020-07-03 21:44:29 +00:00
p5-Statistics-Descriptive
Update to p5-Statistics-Descriptive-3.0800.
2020-11-05 21:47:17 +00:00
pari
Update to pari 2.11.4.
2020-07-16 23:21:47 +00:00
pcalc
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
plplot
Remove BROKEN-powerpc
2019-08-22 19:33:42 +00:00
prover9
Reverse the polarity of MODPY_VERSION; default is now 3.x,
2021-02-23 19:39:08 +00:00
pspp
Don't use printf %n
2021-08-31 18:07:55 +00:00
py2-numpy
set portroach marker
2021-07-20 07:43:41 +00:00
py-affine
switch some Python ports to py3-only. maintainer oks for the relevant
2021-10-24 09:28:46 +00:00
py-bottleneck
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-cftime
Update py-cftime to 1.5.1.
2021-10-16 13:20:24 +00:00
py-cvxopt
update to 1.2.6 for python 3.9 support
2021-05-16 00:35:34 +00:00
py-cvxpy
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-ecos
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-graphviz
switch some Python ports to py3-only. maintainer oks for the relevant
2021-10-24 09:28:46 +00:00
py-h5py
Update h5py to 3.5.0.
2021-10-24 11:43:54 +00:00
py-mpmath
switch some Python ports to py3-only. maintainer oks for the relevant
2021-10-24 09:28:46 +00:00
py-netcdf4
Update py-netcdf4 to 1.5.7.
2021-09-09 09:36:23 +00:00
py-networkx
Update to py3-networkx-2.6.2.
2021-09-01 11:49:37 +00:00
py-numexpr
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-numpy
adapt a few ports to the numpy python2/python3 port split
2021-06-14 01:02:27 +00:00
py-osqp
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-pandas
adjust comments
2021-10-18 10:07:51 +00:00
py-patsy
Make py-patsy and py-scs python3 only so scipy can be updated.
2020-10-08 20:34:52 +00:00
py-pysmt
switch some Python ports to py3-only. maintainer oks for the relevant
2021-10-24 09:28:46 +00:00
py-PyWavelets
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-scikit-image
py-scikit-image uses c++0x so base-gcc cannot be used
2021-01-16 21:49:14 +00:00
py-scikit-learn
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-scipy
Remove USE_LLD=No hack on i386. A fix for the R_386_GOTOFF bug has been
2021-07-31 16:37:56 +00:00
py-scs
regen PLISTs for python ports with .so files that end up renamed due to
2021-01-04 14:06:26 +00:00
py-snuggs
Change the "FLAVOR ?= python3" contruct to "FLAVOR = python3" since these are
2020-08-19 12:25:12 +00:00
py-statistics
Bump the REVISION on all ports that use the python2 version of
2021-05-21 19:50:21 +00:00
py-sympy
update py-sympy to 1.7.1
2020-12-13 04:41:29 +00:00
py-tables
Reverse the polarity of MODPY_VERSION; default is now 3.x,
2021-02-23 19:39:08 +00:00
qhull
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
qrupdate
Bump after MAINTAINER update.
2020-04-06 08:48:06 +00:00
R
Update to R 4.1.1
2021-08-10 10:34:02 +00:00
rstudio
Fix build with upcoming Boost 1.76 update
2021-05-22 12:01:39 +00:00
sc
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
spread-sheet-widget
Update to spread-sheet-widget-0.6 -- note the major bump because some
2020-07-29 17:20:54 +00:00
suitesparse
Bump after MAINTAINER update.
2020-04-06 08:48:06 +00:00
superlu
actually disable fortran
2021-05-17 10:50:04 +00:00
udunits
Update to udunits-2.2.26.
2020-02-20 13:51:54 +00:00
veusz
Reverse the polarity of MODPY_VERSION; default is now 3.x,
2021-02-23 19:39:08 +00:00
visidata
update to visidata-2.6.1, now including menus
2021-10-12 13:39:10 +00:00
wcalc
Remove unresponsive maintainers
2019-07-17 14:46:32 +00:00
wmcalc
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
wxMaxima
replace simple PERMIT_PACKAGE_CDROM=Yes with PERMIT_PACKAGE=Yes
2019-07-12 20:46:54 +00:00
yorick
math/yorick: avoid printf %n. The remaining %n in this port end up in
2021-09-15 21:53:13 +00:00
z3
Reverse the polarity of MODPY_VERSION; default is now 3.x,
2021-02-23 19:39:08 +00:00
Makefile
switch some Python ports to py3-only. maintainer oks for the relevant
2021-10-24 09:28:46 +00:00