959 lines
32 KiB
Plaintext
959 lines
32 KiB
Plaintext
@comment $OpenBSD: PLIST,v 1.1.1.1 2005/03/03 01:42:12 espie Exp $
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bin/bp_aacomp.pl
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bin/bp_biblio.pl
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bin/bp_biofetch_genbank_proxy.pl
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bin/bp_bioflat_index.pl
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bin/bp_biogetseq.pl
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bin/bp_blast2tree.pl
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bin/bp_bulk_load_gff.pl
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bin/bp_chaos_plot.pl
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bin/bp_composite_LD.pl
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bin/bp_contig_draw.pl
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bin/bp_dbsplit.pl
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bin/bp_embl2picture.pl
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bin/bp_extract_feature_seq.pl
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bin/bp_fast_load_gff.pl
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bin/bp_fastam9_to_table.pl
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bin/bp_feature_draw.pl
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bin/bp_fetch.pl
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bin/bp_filter_search.pl
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bin/bp_flanks.pl
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bin/bp_frend.pl
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bin/bp_gccalc.pl
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bin/bp_genbank2gff.pl
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bin/bp_genbank2gff3.pl
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bin/bp_generate_histogram.pl
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bin/bp_glyphs2-demo.pl
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bin/bp_heterogeneity_test.pl
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bin/bp_index.pl
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bin/bp_load_gff.pl
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bin/bp_local_taxonomydb_query.pl
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bin/bp_mask_by_search.pl
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bin/bp_meta_gff.pl
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bin/bp_mrtrans.pl
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bin/bp_mutate.pl
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bin/bp_nexus2nh.pl
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bin/bp_nrdb.pl
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bin/bp_oligo_count.pl
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bin/bp_pairwise_kaks.pl
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bin/bp_pg_bulk_load_gff.pl
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bin/bp_process_gadfly.pl
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bin/bp_process_sgd.pl
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bin/bp_process_wormbase.pl
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bin/bp_remote_blast.pl
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bin/bp_search2BSML.pl
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bin/bp_search2alnblocks.pl
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bin/bp_search2gff.pl
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bin/bp_search2table.pl
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bin/bp_search2tribe.pl
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bin/bp_search_overview.pl
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bin/bp_seq_length.pl
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bin/bp_seqconvert.pl
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bin/bp_split_seq.pl
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bin/bp_sreformat.pl
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bin/bp_taxid4species.pl
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bin/bp_translate_seq.pl
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bin/bp_tree2pag.pl
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bin/bp_unflatten_seq.pl
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${P5SITE}/Bio/
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${P5SITE}/Bio/Align/
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${P5SITE}/Bio/Align/AlignI.pm
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${P5SITE}/Bio/Align/DNAStatistics.pm
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${P5SITE}/Bio/Align/PairwiseStatistics.pm
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${P5SITE}/Bio/Align/ProteinStatistics.pm
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${P5SITE}/Bio/Align/StatisticsI.pm
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${P5SITE}/Bio/Align/Utilities.pm
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${P5SITE}/Bio/AlignIO/
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${P5SITE}/Bio/AlignIO.pm
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${P5SITE}/Bio/AlignIO/bl2seq.pm
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${P5SITE}/Bio/AlignIO/clustalw.pm
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${P5SITE}/Bio/AlignIO/emboss.pm
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${P5SITE}/Bio/AlignIO/fasta.pm
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${P5SITE}/Bio/AlignIO/largemultifasta.pm
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${P5SITE}/Bio/AlignIO/maf.pm
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${P5SITE}/Bio/AlignIO/mase.pm
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${P5SITE}/Bio/AlignIO/mega.pm
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${P5SITE}/Bio/AlignIO/meme.pm
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${P5SITE}/Bio/AlignIO/metafasta.pm
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${P5SITE}/Bio/AlignIO/msf.pm
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${P5SITE}/Bio/AlignIO/nexus.pm
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${P5SITE}/Bio/AlignIO/pfam.pm
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${P5SITE}/Bio/AlignIO/phylip.pm
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${P5SITE}/Bio/AlignIO/po.pm
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${P5SITE}/Bio/AlignIO/prodom.pm
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${P5SITE}/Bio/AlignIO/psi.pm
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${P5SITE}/Bio/AlignIO/selex.pm
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${P5SITE}/Bio/AlignIO/stockholm.pm
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${P5SITE}/Bio/AnalysisI.pm
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${P5SITE}/Bio/AnalysisParserI.pm
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${P5SITE}/Bio/AnalysisResultI.pm
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${P5SITE}/Bio/AnnotatableI.pm
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${P5SITE}/Bio/Annotation/
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${P5SITE}/Bio/Annotation/AnnotationFactory.pm
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${P5SITE}/Bio/Annotation/Collection.pm
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${P5SITE}/Bio/Annotation/Comment.pm
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${P5SITE}/Bio/Annotation/DBLink.pm
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${P5SITE}/Bio/Annotation/OntologyTerm.pm
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${P5SITE}/Bio/Annotation/Reference.pm
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${P5SITE}/Bio/Annotation/SimpleValue.pm
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${P5SITE}/Bio/Annotation/StructuredValue.pm
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${P5SITE}/Bio/Annotation/Target.pm
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${P5SITE}/Bio/Annotation/TypeManager.pm
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${P5SITE}/Bio/AnnotationCollectionI.pm
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${P5SITE}/Bio/AnnotationI.pm
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${P5SITE}/Bio/Assembly/
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${P5SITE}/Bio/Assembly/Contig.pm
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${P5SITE}/Bio/Assembly/ContigAnalysis.pm
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${P5SITE}/Bio/Assembly/IO/
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${P5SITE}/Bio/Assembly/IO.pm
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${P5SITE}/Bio/Assembly/IO/ace.pm
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${P5SITE}/Bio/Assembly/IO/phrap.pm
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${P5SITE}/Bio/Assembly/Scaffold.pm
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${P5SITE}/Bio/Assembly/ScaffoldI.pm
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${P5SITE}/Bio/Assembly/Singlet.pm
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${P5SITE}/Bio/Biblio/
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${P5SITE}/Bio/Biblio.pm
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${P5SITE}/Bio/Biblio/Article.pm
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${P5SITE}/Bio/Biblio/BiblioBase.pm
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${P5SITE}/Bio/Biblio/Book.pm
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${P5SITE}/Bio/Biblio/BookArticle.pm
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${P5SITE}/Bio/Biblio/IO/
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${P5SITE}/Bio/Biblio/IO.pm
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${P5SITE}/Bio/Biblio/IO/medline2ref.pm
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${P5SITE}/Bio/Biblio/IO/medlinexml.pm
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${P5SITE}/Bio/Biblio/IO/pubmed2ref.pm
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${P5SITE}/Bio/Biblio/IO/pubmedxml.pm
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${P5SITE}/Bio/Biblio/Journal.pm
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${P5SITE}/Bio/Biblio/JournalArticle.pm
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${P5SITE}/Bio/Biblio/MedlineArticle.pm
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${P5SITE}/Bio/Biblio/MedlineBook.pm
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${P5SITE}/Bio/Biblio/MedlineBookArticle.pm
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${P5SITE}/Bio/Biblio/MedlineJournal.pm
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${P5SITE}/Bio/Biblio/MedlineJournalArticle.pm
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${P5SITE}/Bio/Biblio/Organisation.pm
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${P5SITE}/Bio/Biblio/Patent.pm
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${P5SITE}/Bio/Biblio/Person.pm
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${P5SITE}/Bio/Biblio/Proceeding.pm
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${P5SITE}/Bio/Biblio/Provider.pm
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${P5SITE}/Bio/Biblio/PubmedArticle.pm
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${P5SITE}/Bio/Biblio/PubmedBookArticle.pm
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${P5SITE}/Bio/Biblio/PubmedJournalArticle.pm
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${P5SITE}/Bio/Biblio/Ref.pm
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${P5SITE}/Bio/Biblio/Service.pm
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${P5SITE}/Bio/Biblio/TechReport.pm
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${P5SITE}/Bio/Biblio/Thesis.pm
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${P5SITE}/Bio/Biblio/WebResource.pm
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${P5SITE}/Bio/Cluster/
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${P5SITE}/Bio/Cluster/ClusterFactory.pm
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${P5SITE}/Bio/Cluster/FamilyI.pm
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${P5SITE}/Bio/Cluster/SequenceFamily.pm
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${P5SITE}/Bio/Cluster/UniGene.pm
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${P5SITE}/Bio/Cluster/UniGeneI.pm
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${P5SITE}/Bio/ClusterI.pm
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${P5SITE}/Bio/ClusterIO/
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${P5SITE}/Bio/ClusterIO.pm
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${P5SITE}/Bio/ClusterIO/dbsnp.pm
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${P5SITE}/Bio/ClusterIO/unigene.pm
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${P5SITE}/Bio/CodonUsage/
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${P5SITE}/Bio/CodonUsage/IO.pm
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${P5SITE}/Bio/CodonUsage/Table.pm
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${P5SITE}/Bio/Coordinate/
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${P5SITE}/Bio/Coordinate/Chain.pm
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${P5SITE}/Bio/Coordinate/Collection.pm
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${P5SITE}/Bio/Coordinate/ExtrapolatingPair.pm
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${P5SITE}/Bio/Coordinate/GeneMapper.pm
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${P5SITE}/Bio/Coordinate/Graph.pm
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${P5SITE}/Bio/Coordinate/MapperI.pm
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${P5SITE}/Bio/Coordinate/Pair.pm
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${P5SITE}/Bio/Coordinate/Result/
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${P5SITE}/Bio/Coordinate/Result.pm
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${P5SITE}/Bio/Coordinate/Result/Gap.pm
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${P5SITE}/Bio/Coordinate/Result/Match.pm
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${P5SITE}/Bio/Coordinate/ResultI.pm
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${P5SITE}/Bio/Coordinate/Utils.pm
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${P5SITE}/Bio/DB/
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${P5SITE}/Bio/DB/Ace.pm
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${P5SITE}/Bio/DB/Biblio/
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${P5SITE}/Bio/DB/Biblio/biofetch.pm
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${P5SITE}/Bio/DB/Biblio/eutils.pm
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${P5SITE}/Bio/DB/Biblio/soap.pm
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${P5SITE}/Bio/DB/BiblioI.pm
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${P5SITE}/Bio/DB/BioFetch.pm
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${P5SITE}/Bio/DB/CUTG.pm
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${P5SITE}/Bio/DB/DBFetch.pm
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${P5SITE}/Bio/DB/EMBL.pm
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${P5SITE}/Bio/DB/Failover.pm
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${P5SITE}/Bio/DB/Fasta.pm
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${P5SITE}/Bio/DB/FileCache.pm
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${P5SITE}/Bio/DB/Flat/
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${P5SITE}/Bio/DB/Flat.pm
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${P5SITE}/Bio/DB/Flat/BDB/
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${P5SITE}/Bio/DB/Flat/BDB.pm
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${P5SITE}/Bio/DB/Flat/BDB/embl.pm
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${P5SITE}/Bio/DB/Flat/BDB/fasta.pm
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${P5SITE}/Bio/DB/Flat/BDB/genbank.pm
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${P5SITE}/Bio/DB/Flat/BDB/swiss.pm
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${P5SITE}/Bio/DB/Flat/BDB/swissprot.pm
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${P5SITE}/Bio/DB/Flat/BinarySearch.pm
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${P5SITE}/Bio/DB/GDB.pm
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${P5SITE}/Bio/DB/GFF/
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${P5SITE}/Bio/DB/GFF.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/
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${P5SITE}/Bio/DB/GFF/Adaptor/ace.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/biofetch.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/biofetch_oracle.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/iterator.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/mysql.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/mysqlace.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/oracle.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/oracleace.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/dbi/pg.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/memory.pm
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${P5SITE}/Bio/DB/GFF/Adaptor/memory_iterator.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/
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${P5SITE}/Bio/DB/GFF/Aggregator.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/alignment.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/clone.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/coding.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/match.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/none.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/processed_transcript.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/transcript.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_acembly.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_genscan.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_refgene.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_softberry.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
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${P5SITE}/Bio/DB/GFF/Aggregator/ucsc_unigene.pm
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${P5SITE}/Bio/DB/GFF/Featname.pm
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${P5SITE}/Bio/DB/GFF/Feature.pm
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${P5SITE}/Bio/DB/GFF/Homol.pm
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${P5SITE}/Bio/DB/GFF/RelSegment.pm
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${P5SITE}/Bio/DB/GFF/Segment.pm
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${P5SITE}/Bio/DB/GFF/Typename.pm
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${P5SITE}/Bio/DB/GFF/Util/
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${P5SITE}/Bio/DB/GFF/Util/Binning.pm
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${P5SITE}/Bio/DB/GFF/Util/Rearrange.pm
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${P5SITE}/Bio/DB/GenBank.pm
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${P5SITE}/Bio/DB/GenPept.pm
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${P5SITE}/Bio/DB/InMemoryCache.pm
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${P5SITE}/Bio/DB/MANIFEST
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${P5SITE}/Bio/DB/Makefile.PL
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${P5SITE}/Bio/DB/MeSH.pm
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${P5SITE}/Bio/DB/NCBIHelper.pm
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${P5SITE}/Bio/DB/Query/
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${P5SITE}/Bio/DB/Query/GenBank.pm
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${P5SITE}/Bio/DB/Query/WebQuery.pm
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${P5SITE}/Bio/DB/QueryI.pm
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${P5SITE}/Bio/DB/RandomAccessI.pm
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${P5SITE}/Bio/DB/RefSeq.pm
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${P5SITE}/Bio/DB/Registry.pm
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${P5SITE}/Bio/DB/SeqI.pm
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${P5SITE}/Bio/DB/SwissProt.pm
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${P5SITE}/Bio/DB/Taxonomy/
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${P5SITE}/Bio/DB/Taxonomy.pm
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${P5SITE}/Bio/DB/Taxonomy/entrez.pm
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${P5SITE}/Bio/DB/Taxonomy/flatfile.pm
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${P5SITE}/Bio/DB/Universal.pm
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${P5SITE}/Bio/DB/UpdateableSeqI.pm
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${P5SITE}/Bio/DB/WebDBSeqI.pm
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${P5SITE}/Bio/DB/XEMBL.pm
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${P5SITE}/Bio/DB/XEMBLService.pm
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${P5SITE}/Bio/DBLinkContainerI.pm
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${P5SITE}/Bio/Das/
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${P5SITE}/Bio/Das/FeatureTypeI.pm
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${P5SITE}/Bio/Das/SegmentI.pm
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${P5SITE}/Bio/DasI.pm
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${P5SITE}/Bio/DescribableI.pm
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${P5SITE}/Bio/Event/
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${P5SITE}/Bio/Event/EventGeneratorI.pm
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${P5SITE}/Bio/Event/EventHandlerI.pm
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${P5SITE}/Bio/Expression/
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${P5SITE}/Bio/Expression/FeatureGroup/
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${P5SITE}/Bio/Expression/FeatureGroup.pm
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${P5SITE}/Bio/Expression/FeatureGroup/FeatureGroupMas50.pm
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${P5SITE}/Bio/Expression/FeatureI.pm
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${P5SITE}/Bio/Expression/FeatureSet/
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${P5SITE}/Bio/Expression/FeatureSet/FeatureSetMas50.pm
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${P5SITE}/Bio/Factory/
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${P5SITE}/Bio/Factory/AnalysisI.pm
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${P5SITE}/Bio/Factory/ApplicationFactoryI.pm
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${P5SITE}/Bio/Factory/DriverFactory.pm
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${P5SITE}/Bio/Factory/FTLocationFactory.pm
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${P5SITE}/Bio/Factory/HitFactoryI.pm
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${P5SITE}/Bio/Factory/LocationFactoryI.pm
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${P5SITE}/Bio/Factory/MapFactoryI.pm
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${P5SITE}/Bio/Factory/ObjectBuilderI.pm
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${P5SITE}/Bio/Factory/ObjectFactory.pm
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${P5SITE}/Bio/Factory/ObjectFactoryI.pm
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${P5SITE}/Bio/Factory/ResultFactoryI.pm
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${P5SITE}/Bio/Factory/SeqAnalysisParserFactory.pm
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${P5SITE}/Bio/Factory/SeqAnalysisParserFactoryI.pm
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${P5SITE}/Bio/Factory/SequenceFactoryI.pm
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${P5SITE}/Bio/Factory/SequenceProcessorI.pm
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${P5SITE}/Bio/Factory/SequenceStreamI.pm
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${P5SITE}/Bio/Factory/TreeFactoryI.pm
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${P5SITE}/Bio/FeatureHolderI.pm
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${P5SITE}/Bio/FeatureIO/
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${P5SITE}/Bio/FeatureIO.pm
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${P5SITE}/Bio/FeatureIO/bed.pm
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${P5SITE}/Bio/FeatureIO/gff.pm
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${P5SITE}/Bio/FeatureIO/gtf.pm
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${P5SITE}/Bio/FeatureIO/interpro.pm
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${P5SITE}/Bio/Graph/
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${P5SITE}/Bio/Graph/Edge.pm
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${P5SITE}/Bio/Graph/IO/
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${P5SITE}/Bio/Graph/IO.pm
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${P5SITE}/Bio/Graph/IO/dip.pm
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${P5SITE}/Bio/Graph/IO/psi_xml.pm
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${P5SITE}/Bio/Graph/ProteinGraph.pm
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${P5SITE}/Bio/Graph/SimpleGraph/
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${P5SITE}/Bio/Graph/SimpleGraph.pm
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${P5SITE}/Bio/Graph/SimpleGraph/Traversal.pm
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${P5SITE}/Bio/Graphics/
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${P5SITE}/Bio/Graphics.pm
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${P5SITE}/Bio/Graphics/ConfiguratorI.pm
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${P5SITE}/Bio/Graphics/Feature.pm
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${P5SITE}/Bio/Graphics/FeatureFile/
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${P5SITE}/Bio/Graphics/FeatureFile.pm
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${P5SITE}/Bio/Graphics/FeatureFile/Iterator.pm
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${P5SITE}/Bio/Graphics/Glyph/
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${P5SITE}/Bio/Graphics/Glyph.pm
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${P5SITE}/Bio/Graphics/Glyph/Factory.pm
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${P5SITE}/Bio/Graphics/Glyph/alignment.pm
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${P5SITE}/Bio/Graphics/Glyph/anchored_arrow.pm
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${P5SITE}/Bio/Graphics/Glyph/arrow.pm
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${P5SITE}/Bio/Graphics/Glyph/box.pm
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${P5SITE}/Bio/Graphics/Glyph/broken_line.pm
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${P5SITE}/Bio/Graphics/Glyph/cds.pm
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${P5SITE}/Bio/Graphics/Glyph/christmas_arrow.pm
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${P5SITE}/Bio/Graphics/Glyph/crossbox.pm
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${P5SITE}/Bio/Graphics/Glyph/dashed_line.pm
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${P5SITE}/Bio/Graphics/Glyph/ellipse.pm
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${P5SITE}/Bio/Graphics/Glyph/ex.pm
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${P5SITE}/Bio/Graphics/Glyph/extending_arrow.pm
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${P5SITE}/Bio/Graphics/Glyph/group.pm
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${P5SITE}/Bio/Graphics/Glyph/lightning.pm
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${P5SITE}/Bio/Graphics/Glyph/line.pm
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${P5SITE}/Bio/Graphics/Glyph/minmax.pm
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${P5SITE}/Bio/Graphics/Glyph/pentagram.pm
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${P5SITE}/Bio/Graphics/Glyph/pinsertion.pm
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