2284 Commits

Author SHA1 Message Date
edd
34a1d6de32 Update math/lrs to version 071a.
Diff sent in by Dimitri Karamazov and then tweaks from sthen@ and myself.

Dimitri is also taking MAINTAINER since I don't use this any more.

Thanks!
2020-11-20 19:16:18 +00:00
martin
04efef6528 Update py-cftime to 1.3.0. 2020-11-20 10:15:39 +00:00
benoit
14156cf446 Update to matio-1.5.19.
From wen heping with tweaks by me
2020-11-18 14:20:14 +00:00
kmos
32db1043f9 py-scikit-learn uses C++11, so needs ports-gcc for base-gcc arches.
ok daniel
2020-11-14 19:20:31 +00:00
benoit
c2990afeb0 Update to p5-Math-GMP-2.20. 2020-11-11 09:21:25 +00:00
benoit
c6514ec169 Update to p5-Statistics-Descriptive-3.0800. 2020-11-05 21:47:17 +00:00
jasper
3c6465a4a1 fix Makefile entry for py-networkx and drop maintainership 2020-11-05 18:34:46 +00:00
rsadowski
8ed6752cb7 Removed "KDE porting team" aka. me as maintainer. 2020-11-03 17:34:50 +00:00
benoit
fda16ec0a5 Update to p5-Math-FFT-1.36. 2020-11-01 10:30:50 +00:00
daniel
f49cc8e774 unbreak sklearn by updating to 0.23.2
Doing "import sklearn" resulted in breakage at runtime due to sklearn
0.20.3 not being compatible with python 3.8.

In addition:
- add WANTLIB
- rework the DEPs for the new version
- remove SKLEARN_NO_OPENMP which was dropped in commit 9876f748

Breakage initially reported by James Cook (who provided many pointers on
moving forward) and also tested the update.
2020-10-28 04:04:04 +00:00
daniel
31b0ea8cdb update to 1.5.3; a bug-fix release 2020-10-28 01:24:38 +00:00
daniel
efb76aed8e retire py-Numeric which has been replaced by py-numpy
ok kmos kn
2020-10-18 20:46:44 +00:00
daniel
1ec5612c68 retire py-Numeric; ok kmos kn 2020-10-18 20:41:25 +00:00
benoit
fffa9d7bc1 Update to p5-Math-FFT-1.35, from wen heping 2020-10-15 07:13:43 +00:00
daniel
9b8e165000 Update py-scipy to 1.5.2 which is now python3-only.
tweaks and ok bket@
2020-10-12 22:04:32 +00:00
daniel
91fed9e036 Update to py-pandas 1.1.3
ok bket@
2020-10-12 21:59:54 +00:00
feinerer
f7483662c9 Update to HDF5 1.10.7 2020-10-12 06:56:07 +00:00
feinerer
763637a16f Update to R 4.0.3 2020-10-10 09:52:51 +00:00
daniel
000dce6fc5 Make py-patsy and py-scs python3 only so scipy can be updated.
ok bket@, kmos@
2020-10-08 20:34:52 +00:00
daniel
67c4f4ba3c Update ocaml-num to 1.3
ok chrisz@
2020-10-07 12:34:24 +00:00
martin
5f63a875de Update cddlib to 0.94l.
Initial diff from maintainer Dimitri Karamazov

OK sthen@
2020-10-04 07:27:36 +00:00
bcallah
eb65f3b8e7 Update to bc-gh-3.1.6
Changelog: https://github.com/gavinhoward/bc/releases/tag/3.1.6
2020-10-03 14:41:23 +00:00
jasper
99fe16c205 update to z3-4.8.9 2020-09-18 07:52:58 +00:00
daniel
0cedcb5459 Repair coq on non-native archs as pointed out by MAINTAINER and also
by recent !native bulk builds.

In particular:
- ocaml-num is needed at runtime, not just at build-time.
- packing list was incorrect, preventing packaging.

Compile tested by cwen@ on powerpc, and by jj@ on mips64. Some basic
runtime tests by myself on powerpc.
2020-09-16 21:13:09 +00:00
rsadowski
f4812811b7 Switch math/veusz to python3
OK bcallah@ (maintainer)
2020-09-16 06:07:46 +00:00
naddy
c552ea72f3 bump for plist changes 6.7 -> 6.8 2020-08-31 22:20:49 +00:00
rsadowski
5e32210316 Remove freemat
Outdated Qt4 application, last update 2010 from steven@ to 4.0

OK steven@
2020-08-27 15:18:30 +00:00
bket
0f18aad150 Update to py-pandas-1.1.0
Changes: https://pandas.pydata.org/pandas-docs/dev/whatsnew/v1.1.0.html

OK daniel@
2020-08-23 09:29:01 +00:00
ajacoutot
46fd384b52 Change the "FLAVOR ?= python3" contruct to "FLAVOR = python3" since these are
python3 only ports.

"Yes please, it's not really optional so I think = is better." sthen@
2020-08-19 12:25:12 +00:00
ajacoutot
5de4df451f Update to gnumeric-1.12.48. 2020-08-13 15:13:09 +00:00
afresh1
91ee99f987 +p5-Math-Prime-Util and p5-Math-Prime-Util-GMP 2020-08-13 03:03:42 +00:00
afresh1
9686803005 Import math/p5-Math-Prime-Util
A module for number theory in Perl. This includes prime sieving,
primality tests, primality proofs, integer factoring, counts /
bounds / approximations for primes, nth primes, and twin primes,
random prime generation, and much more.

This module is the fastest on CPAN for almost all operations it
supports. This includes Math::Prime::XS, Math::Prime::FastSieve,
Math::Factor::XS, Math::Prime::TiedArray, Math::Big::Factors,
Math::Factoring, and Math::Primality (when the GMP module is
available). For numbers in the 10-20 digit range, it is often orders
of magnitude faster. Typically it is faster than Math::Pari for
64-bit operations.

All operations support both Perl UV's (32-bit or 64-bit) and bignums.
If you want high performance with big numbers (larger than Perl's
native 32-bit or 64-bit size), you should install Math::Prime::Util::GMP
and Math::BigInt::GMP. This will be a recurring theme throughout
this documentation -- while all bignum operations are supported in
pure Perl, most methods will be much slower than the C+GMP alternative.

The module is thread-safe and allows concurrency between Perl threads
while still sharing a prime cache. It is not itself multi-threaded.
See the Limitations section if you are using Win32 and threads in
your program. Also note that Math::Pari is not thread-safe (and
will crash as soon as it is loaded in threads), so if you use
Math::BigInt::Pari rather than Math::BigInt::GMP or the default
backend, things will go pear-shaped.

Two scripts are also included and installed by default:
 * primes.pl displays primes between start and end values or
             expressions, with many options for filtering (e.g.
             twin, safe, circular, good, lucky, etc.). Use --help
             to see all the options.
 * factor.pl operates similar to the GNU factor program.
             It supports bigint and expression inputs.

Original from henning@ with adjustments by me
OK sthen@
2020-08-13 03:03:11 +00:00
afresh1
80c75785b3 Import math/p5-Math-Prime-Util-GMP
A module for number theory in Perl using GMP. This includes primality
tests, getting primes in a range, factoring, and more.

While it certainly can be used directly, the main purpose of this
module is for Math::Prime::Util. That module will automatically
load this one if it is installed, greatly speeding up many of its
operations on big numbers.

Inputs and outputs for big numbers are via strings, so you do not
need to use a bigint package in your program. However if you do use
bigints, inputs will be converted internally so there is no need
to convert before a call. Output results are returned as either
Perl scalars (for native-size) or strings (for bigints). Math::Prime::Util
tries to reconvert all strings back into the callers bigint type
if possible, which makes it more convenient for calculations.

The various is_*_pseudoprime tests are more appropriately called
is_*_probable_prime or is_*_prp. They return 1 if the input is a
probable prime based on their test. The naming convention is
historical and follows Pari, Math::Primality, and some other math
packages. The modern definition of pseudoprime is a composite that
passes the test, rather than any number.

Originally from henning@ with adjustments by me
OK sthen@
2020-08-13 03:02:20 +00:00
edd
cb9e832877 math/py-netcdf4: remove misspelt (thus ineffectual) PORT_HOME.
OK martin@ (MAINTAINER).
2020-08-10 21:34:45 +00:00
bket
fc8c6604a4 Drop py2-flavor
OK paco@
2020-08-10 15:30:06 +00:00
bket
8c2113e1c8 Drop py2-flavor
pirofti@ (maintainer): "...please go ahead"
2020-08-10 07:57:36 +00:00
bket
3fbdcee4be Drop py2-flavor
pirofti@ (maintainer): "...please go ahead"
2020-08-10 07:53:59 +00:00
bket
100f027bf8 Drop py2-flavor
OK martin@ (maintainer)
2020-08-10 07:44:06 +00:00
daniel
baac4a0e6e Update to coq 8.12.0; tested by myself and MAINTAINER on amd64. 2020-08-09 02:45:34 +00:00
bcallah
924c96e714 Update to bc-gh-3.1.5. Fixes a pair of crashes.
Changelog: https://github.com/gavinhoward/bc/releases/tag/3.1.5
2020-08-06 05:44:02 +00:00
martin
3b64b99872 Update py-netcdf4 to 1.5.4 and adapt to py-cftime change. 2020-08-05 09:10:16 +00:00
martin
4c2e7f4abb Move py-cftime away from ${MODPY_DEFAULT_VERSION_3} to a proper python3
flavor

prodded by and OK kn@
2020-08-05 09:09:00 +00:00
bcallah
d23f5a91ac Update to bc-gh-3.1.4 2020-08-04 14:24:33 +00:00
bcallah
5a5d5747a3 Update to spread-sheet-widget-0.6 -- note the major bump because some
symbols were removed.

math/pspp is happy with this
2020-07-29 17:20:54 +00:00
martin
563e0aeebd Update py-cftime to 1.2.1. 2020-07-23 18:22:13 +00:00
bcallah
2ba75dec86 Update to spread-sheet-widget-0.5
Note the minor bump
Changelog: http://git.savannah.gnu.org/cgit/ssw.git/log/
Its one consumer (math/pspp) is happy
2020-07-22 15:33:14 +00:00
kmos
d3aea23e66 Another REVISION bump to deal with the same REVISION situation.
I forgot about this one because the build wouldn't attempt until I fixed
the other 3. This resolves building on sparc64.
2020-07-22 06:59:19 +00:00
kmos
d372508443 Bump REVISION on each of these ports to iron out a sparc64 build issue.
I had tested an early diff from pirofti that fixed BUILD_DEPENDS but
also bumped REVISION. In the meantime sthen had just fixed them without
the unnecessary REVISION bump. Bumping REVISION will get them building
on sparc64 again.
2020-07-22 05:25:43 +00:00
daniel
a9834e3878 Update pandas to 1.0.5 to pick up fixes for a few bugs and regressions.
ok bket@
2020-07-18 21:13:41 +00:00
daniel
a5a1170e3c Fix typo in MAINTAINER name; from MAINTAINER. 2020-07-18 18:11:03 +00:00