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split numpy into python2 and python3 ports

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the split will allow the main port to be updated to a newer python3-only
version

ok landry@
This commit is contained in:
daniel 2021-06-14 00:25:39 +00:00
parent b620ac5633
commit b47502666f
9 changed files with 909 additions and 0 deletions
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61
math/py2-numpy/Makefile Normal file
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# $OpenBSD: Makefile,v 1.1.1.1 2021/06/14 00:25:39 daniel Exp $
# XXX version 1.17.0 and up do not support python2 anymore;
# python3 support lives in math/py-numpy
COMMENT= fast array and numeric programming library for Python 2
MODPY_EGG_VERSION= 1.16.6
DISTNAME= numpy-${MODPY_EGG_VERSION}
PKGNAME= py-${DISTNAME}
EXTRACT_SUFX= .zip
CATEGORIES= math devel
HOMEPAGE= https://www.numpy.org/
# BSD
PERMIT_PACKAGE = Yes
WANTLIB += ${MODFORTRAN_WANTLIB} ${MODPY_WANTLIB}
WANTLIB += blas cblas lapack m pthread
MODULES= lang/python \
fortran
MODPY_VERSION = ${MODPY_DEFAULT_VERSION_2}
MODPY_PI = Yes
MODPY_SETUPTOOLS= Yes
MODPY_DISTUTILS_BUILDARGS = --fcompiler=gnu95
TEST_DEPENDS= ${FULLPKGNAME}:${FULLPKGPATH} \
devel/py-test${MODPY_FLAVOR} \
devel/py-tz${MODPY_FLAVOR}
MODFORTRAN_COMPILER = gfortran
BUILD_DEPENDS = ${MODFORTRAN_BUILD_DEPENDS}
LIB_DEPENDS= math/cblas \
math/lapack \
${MODFORTRAN_LIB_DEPENDS}
# Cython 0.28.* uses __attribute__((optimize("Os"))) which
# leads to breakage at runtime on at least macppc.
# -- see: https://marc.info/?l=openbsd-ports&m=153312266209561&w=2
#
# gcc docs also explicitly say that the optimize attribute "is not suitable in production code".
# So let's disable to be safe.
# -- see: https://gcc.gnu.org/onlinedocs/gcc-8.2.0/gcc/Common-Function-Attributes.html
#
# Some related Cython issues:
# https://github.com/cython/cython/issues/2102
# https://github.com/cython/cython/issues/2235
# https://github.com/cython/cython/issues/2494
CFLAGS += -D CYTHON_SMALL_CODE=
pre-build:
cp -f ${WRKSRC}/numpy/distutils/site.cfg ${WRKSRC}/site.cfg
do-test:
cd ${WRKDIR} && ${MAKE_ENV} ${MODPY_BIN} -c \
'import numpy ; numpy.test()'
.include <bsd.port.mk>

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SHA256 (numpy-1.16.6.zip) = 5c8/3xNAGIXo7qgXBiTsliJeIXTrDGEcbybdM7SJ4/8=
SIZE (numpy-1.16.6.zip) = 5143340

29
math/py2-numpy/patches/patch-numpy_core_include_numpy_npy_common_h Normal file
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$OpenBSD: patch-numpy_core_include_numpy_npy_common_h,v 1.1.1.1 2021/06/14 00:25:39 daniel Exp $
XXX recheck powerpc, is this still needed?
py-numpy only checks for expl to determine whether extended-precision
support is present. since we don't have it yet; it implements
it's own. however, on alpha, powerpc, it declared functions with
types that conflict with C99 (double for *l), therefore failed.
Index: numpy/core/include/numpy/npy_common.h
--- numpy/core/include/numpy/npy_common.h.orig
+++ numpy/core/include/numpy/npy_common.h
@@ -320,14 +320,8 @@ typedef unsigned char npy_bool;
#define NPY_FALSE 0
#define NPY_TRUE 1
-
-#if NPY_SIZEOF_LONGDOUBLE == NPY_SIZEOF_DOUBLE
- typedef double npy_longdouble;
- #define NPY_LONGDOUBLE_FMT "g"
-#else
- typedef long double npy_longdouble;
- #define NPY_LONGDOUBLE_FMT "Lg"
-#endif
+typedef long double npy_longdouble;
+#define NPY_LONGDOUBLE_FMT "Lg"
#ifndef Py_USING_UNICODE
#error Must use Python with unicode enabled.

14
math/py2-numpy/patches/patch-numpy_core_setup_common_py Normal file
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$OpenBSD: patch-numpy_core_setup_common_py,v 1.1.1.1 2021/06/14 00:25:39 daniel Exp $
Index: numpy/core/setup_common.py
--- numpy/core/setup_common.py.orig
+++ numpy/core/setup_common.py
@@ -111,7 +111,7 @@ OPTIONAL_STDFUNCS = ["expm1", "log1p", "acosh", "asinh
"rint", "trunc", "exp2", "log2", "hypot", "atan2", "pow",
"copysign", "nextafter", "ftello", "fseeko",
"strtoll", "strtoull", "cbrt", "strtold_l", "fallocate",
- "backtrace", "madvise"]
+ "madvise"]
OPTIONAL_HEADERS = [

16
math/py2-numpy/patches/patch-numpy_distutils_command_build_src_py Normal file
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$OpenBSD: patch-numpy_distutils_command_build_src_py,v 1.1.1.1 2021/06/14 00:25:39 daniel Exp $
fix build of other packages (e.g. py-scipy) in some cases (e.g. when
WRKOBJDIR has a trailing slash)
Index: numpy/distutils/command/build_src.py
--- numpy/distutils/command/build_src.py.orig
+++ numpy/distutils/command/build_src.py
@@ -370,6 +370,7 @@ class build_src(build_ext.build_ext):
# incl_dirs.append(self.build_src)
build_dir = os.path.join(*([self.build_src]\
+name.split('.')[:-1]))
+ build_dir = os.path.normpath(build_dir)
self.mkpath(build_dir)
for func in func_sources:
source = func(extension, build_dir)

18
math/py2-numpy/patches/patch-numpy_distutils_fcompiler_gnu_py Normal file
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$OpenBSD: patch-numpy_distutils_fcompiler_gnu_py,v 1.1.1.1 2021/06/14 00:25:39 daniel Exp $
Causes segmentation fault on powerpc when building py-scipy.
See discussion at:
https://github.com/numpy/numpy/issues/5451
Index: numpy/distutils/fcompiler/gnu.py
--- numpy/distutils/fcompiler/gnu.py.orig
+++ numpy/distutils/fcompiler/gnu.py
@@ -245,7 +245,6 @@ class GnuFCompiler(FCompiler):
opt = ['-O2']
else:
opt = ['-O3']
- opt.append('-funroll-loops')
return opt
def _c_arch_flags(self):

40
math/py2-numpy/patches/patch-numpy_distutils_site_cfg Normal file
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$OpenBSD: patch-numpy_distutils_site_cfg,v 1.1.1.1 2021/06/14 00:25:39 daniel Exp $
--- numpy/distutils/site.cfg.orig Fri Feb 13 15:41:03 2009
+++ numpy/distutils/site.cfg Fri Feb 13 15:41:47 2009
@@ -0,0 +1,36 @@
+[x11]
+library_dirs = /usr/X11R6/lib
+include_dirs = /usr/X11R6/include
+
+# Hack to stop numpy linking against random installed libraries
+
+[mkl]
+mkl_libs = XXXnonexistXXX
+
+[blas_mkl]
+blas_mkl_libs = XXXnonexistXXX
+
+[lapack_mkl]
+lapack_mkl_libs = XXXnonexistXXX
+
+[fftw]
+fftw_libs = XXXnonexistXXX
+
+[lapack_atlas]
+lapack_atlas_libs = XXXnonexistXXX
+
+[atlas]
+atlas_libs = XXXnonexistXXX
+
+[atlas_threads]
+atlas_threads_libs = XXXnonexistXXX
+
+[atlas_blas]
+atlas_blas_libs = XXXnonexistXXX
+
+[atlas_blas_threads]
+atlas_blas_threads_libs = XXXnonexistXXX
+
+[djbfft]
+djbfft_libs = XXXnonexistXXX
+

4
math/py2-numpy/pkg/DESCR Normal file
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NumPy is a Python library for numeric and scientific computing, it
contains a powerful N-dimensional array object, basic linear algebra
functions, basic Fourier transforms, sophisticated random number
capabilities and tools for integrating Fortran code.

725
math/py2-numpy/pkg/PLIST Normal file
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@comment $OpenBSD: PLIST,v 1.1.1.1 2021/06/14 00:25:39 daniel Exp $
@pkgpath math/py-numpy
@comment bin/f2py3
@comment bin/f2py
bin/f2py2
bin/f2py${MODPY_VERSION}
lib/python${MODPY_VERSION}/site-packages/numpy/
lib/python${MODPY_VERSION}/site-packages/num${MODPY_PY_PREFIX}${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/
lib/python${MODPY_VERSION}/site-packages/num${MODPY_PY_PREFIX}${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/PKG-INFO
lib/python${MODPY_VERSION}/site-packages/num${MODPY_PY_PREFIX}${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/SOURCES.txt
lib/python${MODPY_VERSION}/site-packages/num${MODPY_PY_PREFIX}${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/dependency_links.txt
lib/python${MODPY_VERSION}/site-packages/num${MODPY_PY_PREFIX}${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/entry_points.txt
lib/python${MODPY_VERSION}/site-packages/num${MODPY_PY_PREFIX}${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/not-zip-safe
lib/python${MODPY_VERSION}/site-packages/num${MODPY_PY_PREFIX}${MODPY_EGG_VERSION}-py${MODPY_VERSION}.egg-info/top_level.txt
lib/python${MODPY_VERSION}/site-packages/numpy/LICENSE.txt
lib/python${MODPY_VERSION}/site-packages/numpy/__config__.py
lib/python${MODPY_VERSION}/site-packages/numpy/${MODPY_PYCACHE}__config__.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/numpy/__init__.py
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/numpy/${MODPY_PYCACHE}/
lib/python${MODPY_VERSION}/site-packages/numpy/${MODPY_PYCACHE}__init__.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/numpy/_distributor_init.py
lib/python${MODPY_VERSION}/site-packages/numpy/${MODPY_PYCACHE}_distributor_init.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/numpy/_globals.py
lib/python${MODPY_VERSION}/site-packages/numpy/${MODPY_PYCACHE}_globals.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/numpy/_pytesttester.py
lib/python${MODPY_VERSION}/site-packages/numpy/${MODPY_PYCACHE}_pytesttester.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/numpy/compat/
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${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/numpy/compat/${MODPY_PYCACHE}/
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lib/python${MODPY_VERSION}/site-packages/numpy/compat/tests/
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lib/python${MODPY_VERSION}/site-packages/numpy/compat/tests/test_compat.py
lib/python${MODPY_VERSION}/site-packages/numpy/conftest.py
lib/python${MODPY_VERSION}/site-packages/numpy/${MODPY_PYCACHE}conftest.${MODPY_PYC_MAGIC_TAG}pyc
lib/python${MODPY_VERSION}/site-packages/numpy/core/
lib/python${MODPY_VERSION}/site-packages/numpy/core/__init__.py
${MODPY_COMMENT}lib/python${MODPY_VERSION}/site-packages/numpy/core/${MODPY_PYCACHE}/
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