Update to mcl-04-105
from maintainer Andreas Kahari <andreas.kahari@unix.net>
This commit is contained in:
pvalchev
parent
7b7969da6f
commit
a38e0d9846
@ -1,8 +1,8 @@
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# $OpenBSD: Makefile,v 1.2 2003/10/17 19:22:07 naddy Exp $
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# $OpenBSD: Makefile,v 1.3 2004/05/07 23:35:51 pvalchev Exp $
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COMMENT= "clustering algorithm for graphs"
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V= 03-276
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V= 04-105
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DISTNAME= mcl-${V}
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PKGNAME= mcl-${V:S,-,_,}
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CATEGORIES= math
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@ -1,3 +1,3 @@
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MD5 (mcl-03-276.tar.gz) = c51a0ee1952a09b568cfefea24adecd7
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RMD160 (mcl-03-276.tar.gz) = 045787e28bf832a919465ab8c51da0c765aa8f8c
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SHA1 (mcl-03-276.tar.gz) = a16c89cff0fc3aa52c789fd9f023e5c9bafc7adf
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MD5 (mcl-04-105.tar.gz) = fbb023dbec23912c14a9e754a13ecdf0
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RMD160 (mcl-04-105.tar.gz) = 4e95a91bcb82fcc12963d7ae3db3176a5b5c40a6
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SHA1 (mcl-04-105.tar.gz) = 2c6665b7e11cd5383758e2b56956a52e237463fe
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@ -1,6 +1,6 @@
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$OpenBSD: patch-configure,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
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--- configure.orig Tue Jul 8 12:22:58 2003
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+++ configure Tue Jul 8 12:41:36 2003
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$OpenBSD: patch-configure,v 1.2 2004/05/07 23:35:51 pvalchev Exp $
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--- configure.orig 2004-05-07 23:24:32.000000000 +0100
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+++ configure 2004-05-07 23:26:05.000000000 +0100
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@@ -2956,13 +2956,13 @@ fi
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# FIXME: Replace `main' with a function in `-lpthread':
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@ -1,22 +0,0 @@
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$OpenBSD: patch-src_doc_Makefile_in,v 1.1 2003/10/17 19:22:07 naddy Exp $
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--- src/doc/Makefile.in.orig 2003-10-10 23:42:24.000000000 +0100
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+++ src/doc/Makefile.in 2003-10-10 23:42:59.000000000 +0100
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@@ -441,6 +441,18 @@ uninstall-man: uninstall-man1 uninstall-
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.1.txt:
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$(TROFF) -t -e -mandoc -Tascii $< | $(COL) -bx > $@
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+.5.ps:
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+ $(TROFF) -man $< > $@
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+
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+.5.txt:
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+ $(TROFF) -t -e -mandoc -Tascii $< | $(COL) -bx > $@
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+
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+.7.ps:
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+ $(TROFF) -man $< > $@
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+
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+.7.txt:
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+ $(TROFF) -t -e -mandoc -Tascii $< | $(COL) -bx > $@
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+
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.azm.html:
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$(ZOEM) -d html -i $< -o $@
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$(ZOEM) -d html -i $< -o $@
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@ -1,6 +1,6 @@
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$OpenBSD: patch-src_graphs_Makefile_in,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
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--- src/graphs/Makefile.in.orig Mon Jul 7 10:49:41 2003
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+++ src/graphs/Makefile.in Mon Jul 7 10:51:02 2003
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$OpenBSD: patch-src_graphs_Makefile_in,v 1.2 2004/05/07 23:35:51 pvalchev Exp $
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--- src/graphs/Makefile.in.orig 2004-05-07 23:30:44.000000000 +0100
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+++ src/graphs/Makefile.in 2004-05-07 23:32:11.000000000 +0100
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@@ -82,7 +82,9 @@ am__include = @am__include@
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am__quote = @am__quote@
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install_sh = @install_sh@
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@ -10,5 +10,5 @@ $OpenBSD: patch-src_graphs_Makefile_in,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
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+# OpenBSD wants examples in a different location...
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+exampledir = $(datadir)/examples/$(PACKAGE)
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example_DATA = falkner.mci proteins.mci small.mci small.png small.ps\
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data.raw data.hdr data.tab small.tab fznyy.tab
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example_DATA = falkner.mci proteins.mci matula.mci \
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small.mci small.png small.ps\
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@ -1,8 +1,8 @@
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The MCL algorithm is short for the Markov Cluster Algorithm,
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a fast and scalable cluster algorithm for graphs based on
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simulation of (stochastic) flow in graphs. The algorithm was
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developed by Stijn van Dongen at the Centre for Mathematics and
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Computer Science (also known as CWI) in the Netherlands.
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The Markov Cluster Algorithm (MCL) is a fast and scalable
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cluster algorithm for graphs based on simulation of (stochastic)
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flow in graphs. The algorithm was developed by Stijn van Dongen
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at the Centre for Mathematics and Computer Science in the
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Netherlands.
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The MCL algorithm is very fast, very scalable, and has a number
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of attractive properties causing it to deliver high-quality
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@ -1,4 +1,4 @@
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@comment $OpenBSD: PLIST,v 1.2 2003/10/17 19:22:07 naddy Exp $
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@comment $OpenBSD: PLIST,v 1.3 2004/05/07 23:35:51 pvalchev Exp $
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bin/clmdist
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bin/clmformat
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bin/clmimac
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@ -9,6 +9,7 @@ bin/clmresidue
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bin/mcl
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bin/mclpipeline
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bin/mcx
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bin/mcxarray
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bin/mcxassemble
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bin/mcxconvert
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bin/mcxmap
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@ -23,12 +24,15 @@ man/man1/clmresidue.1
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man/man1/mcl.1
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man/man1/mclpipeline.1
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man/man1/mcx.1
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man/man1/mcxarray.1
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man/man1/mcxassemble.1
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man/man1/mcxconvert.1
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man/man1/mcxmap.1
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man/man1/mcxsubs.1
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man/man5/mcxio.5
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man/man7/mclfamily.7
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man/man7/mclfaq.7
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man/man7/mclindex.7
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share/doc/mcl/clmdist.html
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share/doc/mcl/clmdist.ps
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share/doc/mcl/clmformat.html
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@ -47,14 +51,19 @@ share/doc/mcl/index.html
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share/doc/mcl/mcl.html
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share/doc/mcl/mcl.ps
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share/doc/mcl/mcl.txt
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share/doc/mcl/mclfamily.html
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share/doc/mcl/mclfamily.ps
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share/doc/mcl/mclfaq.html
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share/doc/mcl/mclfaq.ps
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share/doc/mcl/mclfaq.txt
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share/doc/mcl/mclindex.ps
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share/doc/mcl/mclmcl.txt
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share/doc/mcl/mclpipeline.html
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share/doc/mcl/mclpipeline.ps
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share/doc/mcl/mcx.html
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share/doc/mcl/mcx.ps
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share/doc/mcl/mcxarray.html
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share/doc/mcl/mcxarray.ps
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share/doc/mcl/mcxassemble.html
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share/doc/mcl/mcxassemble.ps
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share/doc/mcl/mcxconvert.html
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@ -70,6 +79,7 @@ share/examples/mcl/data.raw
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share/examples/mcl/data.tab
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share/examples/mcl/falkner.mci
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share/examples/mcl/fznyy.tab
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share/examples/mcl/matula.mci
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share/examples/mcl/proteins.mci
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share/examples/mcl/small.mci
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share/examples/mcl/small.png
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