Remove biology/nutdb
It fails to build with "-fno-common" and HOMEPAGE indicates that it's no longer being worked on. The website points at https://cronometer.com/ (website / mobile app) to be used in the interim until upstream's NUT rewrite is done. There is NUTsqlite on the sourceforge site's files section, not sure but perhaps that is the rewrite talked about on the website. It is written in Tcl/Tk. (thanks sthen) OK sthen
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# $OpenBSD: Makefile,v 1.11 2020/12/30 15:55:46 sthen Exp $
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# $OpenBSD: Makefile,v 1.12 2021/01/30 14:27:32 kn Exp $
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SUBDIR =
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SUBDIR =
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SUBDIR += AcePerl
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SUBDIR += AcePerl
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SUBDIR += bioperl
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SUBDIR += bioperl
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SUBDIR += emboss
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SUBDIR += emboss
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SUBDIR += hmmer
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SUBDIR += hmmer
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SUBDIR += nutdb
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SUBDIR += p5-Bio-ASN1-EntrezGene
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SUBDIR += p5-Bio-ASN1-EntrezGene
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SUBDIR += p5-Bio-Cluster
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SUBDIR += p5-Bio-Cluster
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SUBDIR += p5-Bio-DB-EMBL
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SUBDIR += p5-Bio-DB-EMBL
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# $OpenBSD: Makefile,v 1.39 2019/07/12 20:43:43 sthen Exp $
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COMMENT= record and analyze your meals for nutrient composition
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V= 20.1
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REVISION= 2
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DISTNAME= nut-${V}
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PKGNAME= nutdb-${V}
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CATEGORIES= biology
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HOMEPAGE= http://nut.sourceforge.net/
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# GPLv2+
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PERMIT_PACKAGE= Yes
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WANTLIB += X11 Xau Xcursor Xdmcp Xext Xfixes Xft Xpm Xinerama
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WANTLIB += c fltk fontconfig m pthread ${COMPILER_LIBCXX}
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MASTER_SITES= ${MASTER_SITE_SOURCEFORGE:=nut/}
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COMPILER = base-clang ports-gcc base-gcc
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NO_TEST= Yes
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LIB_DEPENDS= x11/fltk
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MAKE_FLAGS+= CC="${CC}" \
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CXX="${CXX}" \
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OPT="" \
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prefix=${PREFIX} \
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libdir=${PREFIX}/lib/nutdb
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USE_GMAKE= Yes
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pre-configure:
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perl -pi -e 's,\b(?:nut)\b,nutdb,g;s,\b(?:NUT)\b,NUTDB,g' ${WRKSRC}/nut.1
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do-install:
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${INSTALL_PROGRAM} ${WRKSRC}/nut ${PREFIX}/bin/nutdb
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${INSTALL_PROGRAM} ${WRKSRC}/fltk/Nut ${PREFIX}/bin/Nutdb
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${INSTALL_MAN} ${WRKSRC}/nut.1 ${PREFIX}/man/man1/nutdb.1
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${INSTALL_DATA_DIR} ${PREFIX}/lib/nutdb
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${INSTALL_DATA} ${WRKSRC}/raw.data/* ${PREFIX}/lib/nutdb
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.include <bsd.port.mk>
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SHA256 (nut-20.1.tar.gz) = P4xkhmnU6a86doT/+3S677BPKb/lqEess6qd81QMTHw=
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SIZE (nut-20.1.tar.gz) = 1441077
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$OpenBSD: patch-Makefile,v 1.13 2015/05/09 08:31:34 jasper Exp $
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--- Makefile.orig Sat May 9 10:10:14 2015
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+++ Makefile Sat May 9 10:10:51 2015
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@@ -28,7 +28,7 @@ endif
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ifeq ($(OS),HP-UX)
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CFLAGS := $(OPT) -DNUTDIR=$(NUTDIR) -DFOODDIR=$(FOODDIR)
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else
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-CFLAGS := $(OPT) -DNUTDIR=$(NUTDIR) -DFOODDIR=$(FOODDIR)
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+CFLAGS += $(OPT) -DNUTDIR=$(NUTDIR) -DFOODDIR=$(FOODDIR)
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endif
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CXXFLAGS := $(CFLAGS) `fltk-config --cxxflags`
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NUTDB allows you to record what you eat and analyze your meals for
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nutrient composition. The database included is the USDA Nutrient
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Database for Standard Reference, Release 23.
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@comment $OpenBSD: PLIST,v 1.11 2015/05/09 08:31:34 jasper Exp $
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@bin bin/Nutdb
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@bin bin/nutdb
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lib/nutdb/
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lib/nutdb/WEIGHT.lib
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lib/nutdb/sr27.nut
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@man man/man1/nutdb.1
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@ -1,11 +1,11 @@
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# $OpenBSD: Makefile,v 1.1140 2021/01/30 14:14:38 kn Exp $
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# $OpenBSD: Makefile,v 1.1141 2021/01/30 14:27:32 kn Exp $
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COMMENT = exceptions to pkg_add rules
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COMMENT = exceptions to pkg_add rules
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CATEGORIES = devel databases
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CATEGORIES = devel databases
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DISTFILES =
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DISTFILES =
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# API.rev
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# API.rev
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PKGNAME = quirks-3.528
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PKGNAME = quirks-3.529
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PKG_ARCH = *
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PKG_ARCH = *
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MAINTAINER = Marc Espie <espie@openbsd.org>
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MAINTAINER = Marc Espie <espie@openbsd.org>
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#! /usr/bin/perl
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#! /usr/bin/perl
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# ex:ts=8 sw=4:
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# ex:ts=8 sw=4:
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# $OpenBSD: Quirks.pm,v 1.1156 2021/01/30 14:14:38 kn Exp $
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# $OpenBSD: Quirks.pm,v 1.1157 2021/01/30 14:27:33 kn Exp $
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#
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#
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# Copyright (c) 2009 Marc Espie <espie@openbsd.org>
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# Copyright (c) 2009 Marc Espie <espie@openbsd.org>
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#
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#
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@ -2060,6 +2060,7 @@ my $obsolete_reason = {
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'py-vorbis' => 31,
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'py-vorbis' => 31,
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'py-ogg' => 31,
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'py-ogg' => 31,
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'sattrack' => 32,
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'sattrack' => 32,
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'sattrack' => 33,
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};
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};
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# reasons for obsolete packages
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# reasons for obsolete packages
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@ -2097,6 +2098,7 @@ my @msg = (
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"crashes in many different ways at runtime, does not build with '-fno-common'", #30
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"crashes in many different ways at runtime, does not build with '-fno-common'", #30
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"upstream is dead, python2-only, nothing uses it", #31
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"upstream is dead, python2-only, nothing uses it", #31
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"no more public distfiles, license forbids distributing package due to local changes", #32
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"no more public distfiles, license forbids distributing package due to local changes", #32
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"no longer maintained upstream, website suggests https://cronometer.com until rewrite is done", #33
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);
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);
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# ->is_base_system($handle, $state):
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# ->is_base_system($handle, $state):
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