Initial import of mcl 03-185
The MCL algorithm is short for the Markov Cluster Algorithm, a fast and scalable cluster algorithm for graphs based on simulation of (stochastic) flow in graphs. The algorithm was developed by Stijn van Dongen at the Centre for Mathematics and Computer Science (also known as CWI) in the Netherlands. The MCL algorithm is very fast, very scalable, and has a number of attractive properties causing it to deliver high-quality clusterings. WWW: http://micans.org/mcl/ from Andreas Kahari <andreas.kahari@unix.net>
This commit is contained in:
sturm
parent
513c90141b
commit
1e37926ab8
24
math/mcl/Makefile
Normal file
24
math/mcl/Makefile
Normal file
@ -0,0 +1,24 @@
|
||||
# $OpenBSD: Makefile,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
|
||||
|
||||
COMMENT= "clustering algorithm for graphs"
|
||||
|
||||
V= 03-185
|
||||
DISTNAME= mcl-${V}
|
||||
PKGNAME= mcl-${V:S,-,_,}
|
||||
CATEGORIES= math
|
||||
|
||||
HOMEPAGE= http://micans.org/mcl/
|
||||
|
||||
MAINTAINER= Andreas Kahari <andreas.kahari@unix.net>
|
||||
|
||||
# GPL
|
||||
PERMIT_PACKAGE_CDROM= Yes
|
||||
PERMIT_PACKAGE_FTP= Yes
|
||||
PERMIT_DISTFILES_CDROM= Yes
|
||||
PERMIT_DISTFILES_FTP= Yes
|
||||
|
||||
MASTER_SITES= http://micans.org/mcl/src/
|
||||
|
||||
CONFIGURE_STYLE=gnu
|
||||
|
||||
.include <bsd.port.mk>
|
||||
3
math/mcl/distinfo
Normal file
3
math/mcl/distinfo
Normal file
@ -0,0 +1,3 @@
|
||||
MD5 (mcl-03-185.tar.gz) = 5cfa69fece0d5b05b088d809174f5f7b
|
||||
RMD160 (mcl-03-185.tar.gz) = 74395b4e57ff52758dcfb4403f86438c1cd16d09
|
||||
SHA1 (mcl-03-185.tar.gz) = 76db5f0de8a5adc0d1ec2d02b3bc2844fe50e64a
|
||||
29
math/mcl/patches/patch-configure
Normal file
29
math/mcl/patches/patch-configure
Normal file
@ -0,0 +1,29 @@
|
||||
$OpenBSD: patch-configure,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
|
||||
--- configure.orig Tue Jul 8 12:22:58 2003
|
||||
+++ configure Tue Jul 8 12:41:36 2003
|
||||
@@ -2956,13 +2956,13 @@ fi
|
||||
|
||||
# FIXME: Replace `main' with a function in `-lpthread':
|
||||
|
||||
-echo "$as_me:$LINENO: checking for main in -lpthread" >&5
|
||||
-echo $ECHO_N "checking for main in -lpthread... $ECHO_C" >&6
|
||||
+echo "$as_me:$LINENO: checking for main in -pthread" >&5
|
||||
+echo $ECHO_N "checking for main in -pthread... $ECHO_C" >&6
|
||||
if test "${ac_cv_lib_pthread_main+set}" = set; then
|
||||
echo $ECHO_N "(cached) $ECHO_C" >&6
|
||||
else
|
||||
ac_check_lib_save_LIBS=$LIBS
|
||||
-LIBS="-lpthread $LIBS"
|
||||
+LIBS="-pthread $LIBS"
|
||||
cat >conftest.$ac_ext <<_ACEOF
|
||||
#line $LINENO "configure"
|
||||
#include "confdefs.h"
|
||||
@@ -3004,7 +3004,7 @@ if test $ac_cv_lib_pthread_main = yes; t
|
||||
#define HAVE_LIBPTHREAD 1
|
||||
_ACEOF
|
||||
|
||||
- LIBS="-lpthread $LIBS"
|
||||
+ LIBS="-pthread $LIBS"
|
||||
|
||||
fi
|
||||
|
||||
14
math/mcl/patches/patch-src_graphs_Makefile_in
Normal file
14
math/mcl/patches/patch-src_graphs_Makefile_in
Normal file
@ -0,0 +1,14 @@
|
||||
$OpenBSD: patch-src_graphs_Makefile_in,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
|
||||
--- src/graphs/Makefile.in.orig Mon Jul 7 10:49:41 2003
|
||||
+++ src/graphs/Makefile.in Mon Jul 7 10:51:02 2003
|
||||
@@ -82,7 +82,9 @@ am__include = @am__include@
|
||||
am__quote = @am__quote@
|
||||
install_sh = @install_sh@
|
||||
|
||||
-exampledir = $(datadir)/doc/$(PACKAGE)/examples
|
||||
+#exampledir = $(datadir)/doc/$(PACKAGE)/examples
|
||||
+# OpenBSD wants examples in a different location...
|
||||
+exampledir = $(datadir)/examples/$(PACKAGE)
|
||||
|
||||
example_DATA = falkner.mci proteins.mci small.mci small.png small.ps\
|
||||
data.raw data.hdr data.tab small.tab fznyy.tab
|
||||
11
math/mcl/patches/patch-util_heap_c
Normal file
11
math/mcl/patches/patch-util_heap_c
Normal file
@ -0,0 +1,11 @@
|
||||
$OpenBSD: patch-util_heap_c,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
|
||||
--- util/heap.c.orig Tue Jul 8 12:22:29 2003
|
||||
+++ util/heap.c Tue Jul 8 12:22:41 2003
|
||||
@@ -8,6 +8,7 @@
|
||||
|
||||
|
||||
#include <stdio.h>
|
||||
+#include <string.h>
|
||||
|
||||
#include "alloc.h"
|
||||
#include "heap.h"
|
||||
11
math/mcl/pkg/DESCR
Normal file
11
math/mcl/pkg/DESCR
Normal file
@ -0,0 +1,11 @@
|
||||
The MCL algorithm is short for the Markov Cluster Algorithm,
|
||||
a fast and scalable cluster algorithm for graphs based on
|
||||
simulation of (stochastic) flow in graphs. The algorithm was
|
||||
developed by Stijn van Dongen at the Centre for Mathematics and
|
||||
Computer Science (also known as CWI) in the Netherlands.
|
||||
|
||||
The MCL algorithm is very fast, very scalable, and has a number
|
||||
of attractive properties causing it to deliver high-quality
|
||||
clusterings.
|
||||
|
||||
WWW: ${HOMEPAGE}
|
||||
75
math/mcl/pkg/PLIST
Normal file
75
math/mcl/pkg/PLIST
Normal file
@ -0,0 +1,75 @@
|
||||
@comment $OpenBSD: PLIST,v 1.1.1.1 2003/07/08 10:55:20 sturm Exp $
|
||||
bin/clmdist
|
||||
bin/clmformat
|
||||
bin/clmimac
|
||||
bin/clminfo
|
||||
bin/clmmeet
|
||||
bin/clmresidue
|
||||
bin/mcl
|
||||
bin/mclpipeline
|
||||
bin/mcx
|
||||
bin/mcxassemble
|
||||
bin/mcxconvert
|
||||
bin/mcxmap
|
||||
bin/mcxsubs
|
||||
man/man1/clmdist.1
|
||||
man/man1/clmformat.1
|
||||
man/man1/clmimac.1
|
||||
man/man1/clminfo.1
|
||||
man/man1/clmmeet.1
|
||||
man/man1/clmresidue.1
|
||||
man/man1/mcl.1
|
||||
man/man1/mclpipeline.1
|
||||
man/man1/mcx.1
|
||||
man/man1/mcxassemble.1
|
||||
man/man1/mcxconvert.1
|
||||
man/man1/mcxmap.1
|
||||
man/man1/mcxsubs.1
|
||||
man/man5/mcxio.5
|
||||
man/man7/mclfaq.7
|
||||
share/doc/mcl/clmdist.html
|
||||
share/doc/mcl/clmdist.ps
|
||||
share/doc/mcl/clmformat.html
|
||||
share/doc/mcl/clmformat.ps
|
||||
share/doc/mcl/clmimac.html
|
||||
share/doc/mcl/clmimac.ps
|
||||
share/doc/mcl/clminfo.html
|
||||
share/doc/mcl/clminfo.ps
|
||||
share/doc/mcl/clmmeet.html
|
||||
share/doc/mcl/clmmeet.ps
|
||||
share/doc/mcl/clmresidue.html
|
||||
share/doc/mcl/clmresidue.ps
|
||||
share/doc/mcl/index.html
|
||||
share/doc/mcl/mcl.html
|
||||
share/doc/mcl/mcl.ps
|
||||
share/doc/mcl/mcl.txt
|
||||
share/doc/mcl/mclfaq.html
|
||||
share/doc/mcl/mclfaq.ps
|
||||
share/doc/mcl/mclfaq.txt
|
||||
share/doc/mcl/mclmcl.txt
|
||||
share/doc/mcl/mclpipeline.html
|
||||
share/doc/mcl/mclpipeline.ps
|
||||
share/doc/mcl/mcx.html
|
||||
share/doc/mcl/mcx.ps
|
||||
share/doc/mcl/mcxassemble.html
|
||||
share/doc/mcl/mcxassemble.ps
|
||||
share/doc/mcl/mcxconvert.html
|
||||
share/doc/mcl/mcxconvert.ps
|
||||
share/doc/mcl/mcxio.html
|
||||
share/doc/mcl/mcxio.ps
|
||||
share/doc/mcl/mcxmap.html
|
||||
share/doc/mcl/mcxmap.ps
|
||||
share/doc/mcl/mcxsubs.html
|
||||
share/doc/mcl/mcxsubs.ps
|
||||
share/examples/mcl/data.hdr
|
||||
share/examples/mcl/data.raw
|
||||
share/examples/mcl/data.tab
|
||||
share/examples/mcl/falkner.mci
|
||||
share/examples/mcl/fznyy.tab
|
||||
share/examples/mcl/proteins.mci
|
||||
share/examples/mcl/small.mci
|
||||
share/examples/mcl/small.png
|
||||
share/examples/mcl/small.ps
|
||||
share/examples/mcl/small.tab
|
||||
@dirrm share/examples/mcl
|
||||
@dirrm share/doc/mcl
|
||||
Loading…
Reference in New Issue
Block a user