2010-12-13 05:26:00 -05:00
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# $OpenBSD: Makefile,v 1.8 2010/12/13 10:26:00 jasper Exp $
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2005-03-02 20:42:12 -05:00
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2007-09-15 17:32:05 -04:00
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COMMENT= perl tools for bioinformatics
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2005-03-02 20:42:12 -05:00
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DISTNAME= bioperl-1.5.0
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PKGNAME= ${DISTNAME} # No p5-prefix here.
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REVISION= 1
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CATEGORIES= biology
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HOMEPAGE= http://bioperl.org/
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2010-12-13 05:26:00 -05:00
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# perl
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PERMIT_PACKAGE_CDROM= Yes
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PERMIT_PACKAGE_FTP= Yes
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PERMIT_DISTFILES_CDROM= Yes
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PERMIT_DISTFILES_FTP= Yes
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2010-12-13 05:26:00 -05:00
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MASTER_SITES= ${HOMEPAGE}/DIST/
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MODULES= cpan
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MODCPAN_EXAMPLES= Yes
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MODCPAN_EXAMPLES_DIR= ${PREFIX}/share/examples/bioperl/
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2010-12-13 05:26:00 -05:00
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RUN_DEPENDS= biology/AcePerl \
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databases/p5-DBD-mysql \
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devel/p5-Class-AutoClass \
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devel/p5-Clone \
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devel/p5-Graph \
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devel/p5-IO-String \
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devel/p5-IO-stringy \
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graphics/p5-GD \
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graphics/p5-GD-SVG \
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graphics/p5-SVG \
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textproc/p5-Libxml \
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textproc/p5-XML-Parser \
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textproc/p5-XML-SAX \
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textproc/p5-XML-Twig \
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textproc/p5-XML-Writer \
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www/p5-HTML-Parser \
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www/p5-SOAP-Lite \
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www/p5-libwww
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2009-05-19 06:35:19 -04:00
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REGRESS_DEPENDS=${RUN_DEPENDS}
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# stuff not yet integrated:
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# SVG::Graph, Generate optional SVG output,
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# (The Bio::TreeIO::svggraph in Bioperl needs it for creating SVG images)
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# XML::SAX::Writer, New style SAX parser,
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# (The Bio::SeqIO::tigrxml,Bio::SeqIO::bsml_sax in Bioperl needs it for Writers)
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# srsperl, Sequence Retrieval System (SRS) perl
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# (needed for API/alternative way of retrieving sequences/Bio::LiveSeq::IO::SRS.pm)
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2010-12-13 05:26:00 -05:00
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CONFIGURE_ENV+= PERL_MM_USE_DEFAULT=Yes
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2010-09-10 09:46:21 -04:00
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pre-configure:
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@rm -f ${WRKSRC}/Bio/Graphics/FeatureFile.pm.orig
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.include <bsd.port.mk>
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