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freebsd-ports/science
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Dmitry Sivachenko c2fe293b67 Fix build after r369447 
Patch by Thierry Thomas <thierry@FreeBSD.org>
2014-09-30 08:39:34 +00:00
..
2d-rewriter - Update to 1.5 2014-06-05 19:36:14 +00:00
afni Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
avogadro - Drop @dirrm* from plist 2014-09-24 01:43:20 +00:00
bddsolve
bft Add USES=libtool and INSTALL_TARGET=install-strip 2014-07-08 15:24:14 +00:00
bodr Convert a bunch of USE_BZIP2 to USES=tar:bzip2 2014-07-29 18:41:15 +00:00
brian Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
buddy Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
cdcl - Update to 5.4.8 2014-05-22 15:46:16 +00:00
cdf Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
cdo - Update to 1.6.4 2014-07-04 02:49:34 +00:00
cgnslib Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
cgribex
checkmol Stagify. 2014-06-10 12:52:48 +00:00
chemical-mime-data Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
chemtool - Fix missing library problems when the linker enforces explicit linking 2014-08-26 14:06:08 +00:00
chemtool-devel - Fix missing library problems when the linker enforces explicit linking 2014-08-26 14:06:08 +00:00
clhep science/clhep: Upgrade version 2.2.0.1 => 2.2.0.3 2014-08-24 09:07:33 +00:00
colt Remove NOPORTDOCS and NOPORTEXAMPLES. 2014-07-04 22:08:14 +00:00
crf++ - Convert to USES=libtool 2014-07-08 15:18:44 +00:00
dcl Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
devisor Stagify. 2014-06-10 14:43:35 +00:00
dlpoly-classic - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
ecs Upgrade to version 2.0.3. 2014-09-14 14:42:20 +00:00
elmer-eio Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
elmer-matc Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
elmer-meshgen2d Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
elmergrid Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
epte
fastcap Repair instances, almost all courtesy of bf ;-), of spaces 2014-07-29 20:55:27 +00:00
fasthenry Support stage 2014-08-29 18:33:30 +00:00
fisicalab math/gsl: 2014-08-17 13:09:56 +00:00
fvcom Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
fvcom-mpi - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
fvm - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
gchemutils Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
getdp Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
ghemical science/mpqc: Don't override libtool -version-info, bump dependent ports 2014-09-25 13:56:06 +00:00
ghmm - Convert to USES=libtool 2014-07-08 14:50:22 +00:00
gnudatalanguage Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
gramps - Set CPPFLAGS and LIBS in a number of ports so configure can find libintl.h 2014-09-25 15:18:27 +00:00
grib_api - Add grib_api 1.12.3 2014-08-29 17:31:42 +00:00
gromacs - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
gsmc - Fix missing library problems when the linker enforces explicit linking 2014-08-26 14:06:08 +00:00
gtamsanalyzer Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
gwyddion Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
h5utils Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
harminv Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
hdf Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
hdf5 - Mark MAKE_JOBS_UNSAFE 2014-05-24 06:50:24 +00:00
hdf-java Convert GMAKE to MAKE_CMD 2014-06-25 05:35:31 +00:00
hs-bio Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
InsightToolkit
isaac-cfd Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
jmol
jstrack science/jstrack: Unbreak; author verified distfile was rerolled 2014-09-25 16:53:43 +00:00
kalzium Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
kst2 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
lamprop Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
libctl Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
libghemical science/mpqc: Don't override libtool -version-info, bump dependent ports 2014-09-25 13:56:06 +00:00
libint science: Fix mpqc, libint and unbreak ghemical, and libghemical atomically 2014-09-25 11:04:02 +00:00
libkml - Add SWIG option 2014-05-25 18:47:55 +00:00
liblinear Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
liboglappth Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
libquantum Convert to USES=libtool 2014-07-08 13:34:32 +00:00
libsvm Remove indefinite articles and trailing periods from COMMENT, plus 2014-07-17 08:57:51 +00:00
libsvm-python - Update to 3.18 2014-05-30 13:47:15 +00:00
linsmith - maintain by hamradio as we have gsmc another smith charting program 2014-06-29 11:55:30 +00:00
massxpert - Support staging. 2014-06-30 20:38:59 +00:00
mbdyn Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
medit Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
meep - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
mei - Add USES=libtool 2014-07-07 21:57:42 +00:00
metaf2xml Add DOCS option where PORTDOCS is in plist. 2014-07-16 03:18:26 +00:00
minc2 Use default LIBTOOLIZE_ARGS 2014-09-13 18:25:04 +00:00
mol2ps Stagify. 2014-06-10 14:46:36 +00:00
mpb Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
mpqc science/mpqc: Don't override libtool -version-info, bump dependent ports 2014-09-25 13:56:06 +00:00
mpqc-mpich Stage science/mpqc and science/mpqc-mpich 2014-09-08 00:20:03 +00:00
ncs - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
netcdf
netcdf-cxx - Use USE_GITHUB 2014-08-15 17:27:48 +00:00
netcdf-fortran - Update to 4.4.1 2014-09-13 15:19:28 +00:00
nifticlib
openbabel
openkim Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
p5-Algorithm-SVMLight Modernize LIB_DEPENDS 2014-07-14 18:42:04 +00:00
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB - Pass maintainership to perl@ 2014-05-22 15:02:27 +00:00
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.27 2014-06-25 12:14:23 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
paraview Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pnetcdf - Update net/openmpi from 1.8.2 to 1.8.3 2014-09-28 03:41:24 +00:00
psychopy Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pulseview science/pulseview: Remove unnecessary RUN_DEPENDS 2014-08-03 16:16:21 +00:00
py-cdo - Add py-cdo 1.2.3 2014-09-13 15:18:32 +00:00
py-coards
py-DendroPy - Support staging 2014-06-01 21:30:40 +00:00
py-h5py Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-hcluster Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-mdp Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-mlpy Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-netCDF4 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-obspy Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-paida science/py-paida: support stage 2014-08-05 13:22:35 +00:00
py-pupynere Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-pyaixi
py-pydap Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-pydicom - Added STAGE support 2014-05-31 13:51:28 +00:00
py-pysal Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-scikit-learn Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-scimath Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
py-scipy Fix build after r369447 2014-09-30 08:39:34 +00:00
py-ws2300 - Update to 1.9 2014-05-29 05:11:17 +00:00
pybrain Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pycdf Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pynn Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pyteomics Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
pyteomics.biolccc
qcl - Fix build with clang by using std::vector instead of variable size array of non-POD type 2014-09-04 18:43:58 +00:00
qtresistors
R-cran-AMORE Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-bayesm Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-DCluster Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-e1071 Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-eco Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-Epi Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-epicalc Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-snow Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
R-cran-som Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
rubygem-ai4r science/rubygem-ai4r: update to 1.13 2014-08-23 21:52:50 +00:00
rubygem-cdo - Add rubygem-cdo 1.2.3 2014-09-13 15:18:54 +00:00
rubygem-netcdf
sigrok-cli science/sigrok-cli: update to 0.5.0 2014-07-28 23:06:29 +00:00
sigrok-firmware Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00
sigrok-firmware-fx2lafw Add new port: science/sigrok-firmware-fx2lafw 2014-08-03 22:24:50 +00:00
sigrok-firmware-utils Add new port: science/sigrok-firmware-utils 2014-08-03 22:09:07 +00:00
silo - Update to 4.10 2014-09-12 23:32:38 +00:00
simlib Stagify. 2014-06-10 15:07:59 +00:00
simsmith Java based Smith chart program. Performs single-frequency and sweep charting 2014-07-03 21:02:10 +00:00
step Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
svmlight In some straightforward cases, protect documentation behind 2014-08-04 03:40:14 +00:00
szip
udunits - Update to 2.2.17 2014-09-03 19:09:22 +00:00
v_sim Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
veusz Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
vmd Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.5 2014-09-18 04:41:04 +00:00
xmakemol Update the default version of GCC in the Ports Collection from GCC 4.7.4 2014-09-10 20:50:31 +00:00
Makefile Remove expired ports 2014-09-20 09:45:04 +00:00