freebsd-ports/science
Tobias C. Berner 8b0550574d MFH: r554144
Update KDE Apps to 20.08.3

Some of our projects release on their own timescale and some get released
en-masse. The 20.08.3 bundle of projects was released today with dozens of
bugfixes and will be available through app stores and distros soon. See the
20.08.3 releases page for details.

Some of the fixes in today’s releases:

    * Gwenview no longer accidentally shows the thumbnail view as a separate window with newer Qt versions
    * Sending SMS with KDEConnect has been restored
    * Fixed a possible Okular crash when selecting text in annotations

Announcement:
	https://kde.org/announcements/releases/2020-11-apps-update/

Changelog:
	https://kde.org/announcements/fulllog_releases-20.08.3/

Approved by:	ports-secteam (fluffy)
2020-11-06 04:27:31 +00:00
..
2d-rewriter science/2d-rewriter: 2020-03-29 05:55:51 +00:00
abinit Mark BROKEN: fails to build 2020-05-29 08:38:54 +00:00
afni science/afni: update to 20.2.19 2020-09-30 11:11:44 +00:00
agrum science/agrum: Update 0.18.0 -> 0.18.1 2020-07-20 19:12:02 +00:00
aircraft-datcom science/aircraft-datcom: Unbreak build with GCC 10 2020-07-04 11:07:57 +00:00
ALPSCore - Swap back from net/openmpi3 to net/openmpi 2020-04-21 21:26:56 +00:00
antioch
apbs science/apbs: fix build on current 2020-08-27 18:37:59 +00:00
atompaw
avogadro2
avogadrolibs science/avogadrolibs: Remove a broken option VTK set to default by mistake 2020-04-27 16:09:56 +00:00
bagel Chase ScaLAPACK´s upgrade and resolve conflict between cblas and openblas. 2020-06-14 09:14:03 +00:00
bddsolve
berkeleygw science/berkeleygw: Unbreak build with GCC 10 2020-06-25 06:50:17 +00:00
bodr
buddy
cdcl science/cdcl: fix build on recent current 2020-08-28 16:09:15 +00:00
cdf science/cdf: Unbreak build with GCC 10 2020-07-04 10:40:42 +00:00
cdk
cdo Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H 2020-05-16 10:51:44 +00:00
cgnslib Upgrade to v4.1.2 and add a test target. 2020-09-13 09:26:10 +00:00
cgribex Update to 1.9.4 2020-05-16 10:51:49 +00:00
checkmol - Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems 2020-03-06 06:26:05 +00:00
chemical-mime-data
chemps2 Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
chemtool science/chemtool: Fix build on 13 by adding -fcommon 2020-09-20 23:32:51 +00:00
chemtool-devel
chrono - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
clhep
clipper
code_saturne Upgrade to v6.1.2 (6.2.0 is still an intermediate release). 2020-09-13 19:31:29 +00:00
colt
coordgenlibs science/coordgenlibs: Update 1.4.0-6 -> 1.4.1 2020-06-29 00:46:52 +00:00
cp2k Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518 2020-05-20 02:27:15 +00:00
cp2k-data science/cp2k-data: Update 6.1.0 -> 7.1.0 2020-05-25 04:00:02 +00:00
crf++ Clean up some things 2020-09-24 08:50:25 +00:00
dalton Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
datawarrior Deprecate ports broken for more than 6 months 2020-07-26 07:32:00 +00:00
dcl science/dcl: Unbreak build with GCC 10 2020-07-04 06:54:39 +00:00
devisor
dftbplus science/dftbplus: Change to python3. 2020-05-20 00:36:40 +00:00
dkh
dlib-cpp science/dlib-cpp and science/py-dlib: Update to 19.21. 2020-08-20 09:50:18 +00:00
dlpoly-classic science/dlpoly-classic: Change dependency to openmpi3 2020-04-12 14:31:17 +00:00
drawxtl
dvc Fix build post-r547793. 2020-09-09 15:24:00 +00:00
eccodes Use local patch file instead of PATCHFILES 2020-09-19 15:35:11 +00:00
elk science/elk: Update 5.2.14 -> 6.8.4 2020-06-30 15:12:48 +00:00
elmerfem science/elmerfem: Update to 8.4.20200708 and fix dependencies 2020-07-31 09:49:03 +00:00
epte science/epte: fix build on recent current 2020-08-28 20:59:08 +00:00
erd
ergo Some days it does not pay to get out of bed. 2020-05-15 04:25:56 +00:00
erkale - Update math/armadillo to 9.900.2 2020-08-10 13:12:01 +00:00
erkale-pseudopotentials science/erkale-pseudopotentials: Update g20190114 -> g20200426 2020-05-07 00:32:03 +00:00
fastcap science/fastcap: fix build on recent current 2020-08-28 22:00:33 +00:00
fasthenry science/fasthenry: fix build on recent current 2020-08-28 22:02:42 +00:00
fastjet science/fastjet: Enable plugins; Fix the config program 2020-05-26 17:10:15 +00:00
fisicalab Return theraven's ports to the pool after safekeeping his commit bit. 2020-03-05 20:49:05 +00:00
fsom
fvcom
fvcom-mpi - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
gabedit science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13 2020-09-20 22:12:22 +00:00
gamess-us Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
gchemutils
gdma
getdp
ghemical science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option 2020-05-10 21:40:08 +00:00
ghmm
gnudatalanguage Unbreak bulk -a 2020-09-19 14:15:42 +00:00
gpaw-setups
gramps Convert the tree to use PY_PILLOW 2020-03-24 19:54:57 +00:00
grib_api
gromacs science/gromacs: Update 2020.2 -> 2020.3 2020-07-16 06:32:45 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf science/hdf: update to 4.2.15 to fix build on powerpc64 2020-08-22 20:43:44 +00:00
hdf5 Revert r529778, ports depending on it were not tested 2020-03-29 20:41:45 +00:00
hdf5-18
healpix
hepmc3 science/hepmc3: Update science/hepmc3: Update 3.2.1 -> 3.2.2 2020-06-15 04:02:53 +00:00
highfive science/highfive: Update 2.2.1 -> 2.2.2 2020-08-03 03:29:56 +00:00
hypre science/hypre: Update 2.19.0 -> 2.20.0 2020-09-25 19:01:00 +00:00
iboview Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
InsightToolkit - Update devel/gdcm to 3.0.7. 2020-07-04 20:53:55 +00:00
isaac-cfd science/isaac-cfd: Unbreak build with GCC 10 2020-07-04 08:00:41 +00:00
jdftx science/jdftx: Update 1.5.0 -> 1.6.0 2020-06-15 20:29:51 +00:00
jmol science/jmol: Update 14.31.7 -> 14.31.8 2020-09-29 08:25:14 +00:00
jstrack
kalzium MFH: r554144 2020-11-06 04:27:31 +00:00
kim-api
kst2 Force to rebuild after math/matio update 2020-09-26 16:30:14 +00:00
lammps science/lammps: Update 24Aug2020 -> 18Sep2020 2020-09-19 03:35:55 +00:00
lamprop
latte science/latte: Update 1.2.1 -> 1.2.2 2020-05-07 01:02:37 +00:00
libaec
libccp4 science/libccp4: Unbreak build with GCC 10 2020-07-04 11:10:29 +00:00
libcint science/libcint: Update 3.0.20 -> 3.1.1 2020-08-27 05:37:22 +00:00
libctl
libefp
libgeodecomp - Fix build 2020-09-20 07:35:09 +00:00
libghemical
libgridxc MFH: r552183 2020-10-13 08:13:39 +00:00
libint
libint2
libkml Convert REINPLACE_CMD to patch files 2020-05-08 20:50:41 +00:00
liblinear Update to 2.41 2020-08-27 18:43:36 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc science/libxc: remove patch 2020-05-02 20:20:28 +00:00
liggghts science/liggghts: Remove the unnecessary VTK_DIR 2020-04-27 16:26:42 +00:00
luscus science/luscus: Fix build on 13 2020-09-21 16:24:03 +00:00
madness Update devel/tbb to 2020.3 and bump dependent ports' revisions 2020-07-17 10:12:25 +00:00
maeparser science/maeparser: Update 1.2.2 -> 1.2.3 2020-03-17 07:19:57 +00:00
massxpert Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
mbdyn Mark as BROKEN on powerpc64: 2020-05-18 01:38:12 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps - Remove compat < 11 dependencies from bootstrap and compiler. It could fix problems 2020-03-06 06:26:05 +00:00
molgif
molscript
molsketch
mpb Change the maintainer entry in rhurlin's ports 2020-09-10 19:17:38 +00:00
mpqc
msms
multiwfn Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
namd
nest Drop dependency on devel/openmp 2020-03-08 21:56:36 +00:00
netcdf
netcdf-cxx
netcdf-fortran science/netcdf-fortran: Unbreak build with GCC 10 2020-07-26 17:58:54 +00:00
nifticlib
nwchem science/nwchem: Update to 7.0.0-release 2020-05-07 07:58:36 +00:00
nwchem-data science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0 2020-05-07 02:54:17 +00:00
octopus Mark BROKEN 2020-05-16 10:03:40 +00:00
openbabel
openkim
openkim-models
opensim-core Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
opensph science/opensph: Use USE_WX instead of the LIB_DEPENDS with the WX library 2020-09-01 20:00:46 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR Update to 1.38 2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter Add NO_ARCH 2020-04-21 19:47:40 +00:00
p5-Geo-Coordinates-Converter-iArea Cosmetic change 2020-04-21 19:37:40 +00:00
p5-Geo-WebService-Elevation-USGS - Update to 0.117 2020-04-18 08:35:03 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 science/pagmo2: Update 2.15.0-95 -> 2.15.0-102 2020-09-19 19:52:53 +00:00
paje
pcmsolver
PETSc
plumed science/plumed: Update 2.6.0 -> 2.6.1 2020-07-16 19:51:30 +00:00
pnetcdf - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
pulseview science/pulseview: prepare for Qt5-5.15 2020-05-30 10:09:51 +00:00
py-abipy math/py-seaborn: Update to 0.10.1 2020-05-31 21:03:37 +00:00
py-asdf Update to 2.7.1 2020-08-21 21:24:31 +00:00
py-ase science/py-ase: Update 3.20.0 -> 3.20.1 2020-09-05 06:05:19 +00:00
py-avogadrolibs
py-cdo
py-chainer Bump PORTREVISION for devel/protobuf shlib change 2020-08-30 20:19:41 +00:00
py-chainer-chemistry science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1 2020-08-17 20:05:58 +00:00
py-chempy science/py-chempy: Update 0.7.11 -> 0.7.12 2020-07-06 17:14:00 +00:00
py-coards
py-DendroPy
py-dlib science/py-dlib: Fix plist. 2020-08-29 18:15:01 +00:00
py-eccodes-python
py-geolinks
py-geomet
py-geometer Update to 0.2.3 2020-07-09 18:09:16 +00:00
py-geometric Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-gpaw Mark BROKEN 2020-05-17 18:33:45 +00:00
py-GPy science/py-GPy: Change to USES=python because it builds fine with python-3.7 2020-04-08 06:35:03 +00:00
py-GPyOpt science/py-GPyOpt: Update 1.2.5 -> 1.2.6 2020-04-08 06:39:07 +00:00
py-gsd science/py-gsd: Update 2.1.2 -> 2.2.0 2020-09-06 14:40:22 +00:00
py-h5json
py-h5py
py-kim-query science/py-kim-query: Update 1.0.0 -> 1.1.0 2020-08-28 19:44:09 +00:00
py-kinematics
py-kliff Unbreak bulk -a 2020-07-14 07:59:28 +00:00
py-liac-arff Update to 2.5.0 2020-09-05 10:10:15 +00:00
py-lifelines Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-MDAnalysis Unbreak bulk -a 2020-06-13 15:05:44 +00:00
py-MDAnalysisTests Unbreak bulk -a 2020-06-13 15:05:44 +00:00
py-mdp science/py-mdp: remove optional expired dependency on devel/py-pp 2020-08-15 11:19:52 +00:00
py-mmtf-python
py-molmod science/py-molmod: Update 1.4.7 -> 1.4.8 2020-06-26 01:57:29 +00:00
py-moltemplate science/py-moltemplate: Update 2.18.3 -> 2.18.6 2020-09-29 08:19:32 +00:00
py-netCDF4
py-obspy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-oddt
py-OpenFermion Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-openpiv science/py-openpiv: update to 0.22.3 2020-09-28 21:18:16 +00:00
py-paida
py-paramz
py-phono3py Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-phonopy science/py-phonopy: Update 2.7.1 -> 2.8.0 2020-09-24 01:03:56 +00:00
py-pupynere
py-pyaixi
py-pycsw
py-pydicom - Update to 1.4.2 2020-04-22 08:01:18 +00:00
py-PyFR science/py-PyFR: Update 1.9.0 -> 1.10.0 2020-05-29 05:48:10 +00:00
py-pygeodesy
py-pygeometa
py-pygmo2 science/py-pygmo2: Update 2.15.0-121 -> 2.15.0-139 2020-09-19 19:55:21 +00:00
py-pymatgen - Update WWW 2020-05-26 09:32:48 +00:00
py-pymol pymol fails to build with python 2.7 2020-05-29 08:42:46 +00:00
py-pyosf
py-pysal
py-pyteomics Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-qcelemental science/py-qcelemental: Update 0.12.0 -> 0.16.0 2020-09-13 19:43:38 +00:00
py-qcengine science/py-qcengine: Update 0.10.0 -> 0.16.0 2020-09-13 19:47:28 +00:00
py-qspin
py-quantities
py-rmf Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
py-rmsd
py-ruffus
py-scikit-fuzzy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-scikit-learn - Update WWW 2020-06-17 09:35:01 +00:00
py-scikit-optimize Update to 0.8.1 2020-09-06 15:37:09 +00:00
py-scikit-sparse
py-scimath - Update to 4.2.0 2020-09-25 03:11:49 +00:00
py-scipy science/py-scipy: Unbreak build with GCC 10 2020-07-05 11:02:17 +00:00
py-scoria science/py-scoria: Update 1.0.4 -> 1.0.5 2020-03-28 04:04:51 +00:00
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.15.1 -> 1.16.0 2020-08-03 07:26:39 +00:00
py-tensorflow Bump PORTREVISION for devel/protobuf shlib change 2020-08-30 20:19:41 +00:00
py-veusz Update py-sip to 4.19.21 and qscintilla2 to 2.11.4 2020-04-11 05:04:40 +00:00
pybrain Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 4). 2020-05-27 15:31:55 +00:00
pynn
qbox science/qbox: Update 1.71.5 -> 1.72.0 2020-09-25 19:01:45 +00:00
qcl
qiskit-aer devel/libfmt: Update to 7.0.3 2020-09-07 21:19:41 +00:00
qmcpack Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-bayesm math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-cmprsk - Update to 2.2-10 2020-06-14 12:16:54 +00:00
R-cran-DCluster math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-e1071 math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-eco math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-Epi - Update to 2.41 2020-08-10 08:08:06 +00:00
R-cran-epicalc math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-etm - Update to 1.1.1 2020-09-09 08:59:47 +00:00
R-cran-FAdist math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-fastICA math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-kernlab math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-snow math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-som math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
R-cran-udunits2 math/R: Update to version 4.0.0 2020-05-05 16:07:53 +00:00
rdkit Convert the tree to use PY_PILLOW 2020-03-24 19:54:57 +00:00
rmf
rubygem-ai4r
rubygem-cdo Update to 1.5.1 2020-05-16 11:04:45 +00:00
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile Update to 3.0.0 2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis science/scidavis: 2020-05-27 20:10:56 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo science/silo: Backport of patches from Debian to support Python 3 2020-09-27 11:32:55 +00:00
simbody Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
simgrid science/simgrid: add libunwind to dependencies on powerpc64 2020-09-12 19:19:49 +00:00
simint
simlib
simsmith Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
smoldyn
sparta science/sparta: Update 24Jan2020 -> 6Jul2020 2020-07-13 23:41:01 +00:00
spglib science/spglib: Update 1.15.1 -> 1.16.0 2020-08-03 07:26:08 +00:00
step MFH: r554144 2020-11-06 04:27:31 +00:00
svmlight
szip
teem
tfel
tinker science/tinker: Update 8.7.2 -> 8.8.1 2020-08-17 20:37:46 +00:00
udunits
v_sim - Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching) 2020-08-04 16:00:43 +00:00
vipster devel/libfmt: Update to 7.0.3 2020-09-07 21:19:41 +00:00
vmd
voro++
votca science/votca: Update 1.6.1 -> 1.6.2 2020-08-29 18:44:12 +00:00
wannier90 science/wannier90: Update 3.0.0 -> 3.1.0 2020-03-08 02:34:49 +00:00
wwplot
wxmacmolplt x11-toolkits/wxgtk30: Update to 3.0.5.1 2020-05-17 05:55:12 +00:00
xcrysden science/xcrysden: Fix build on 13 by adding -fcommon 2020-09-21 00:45:07 +00:00
xdrawchem
xfce4-equake-plugin
xtb science/xtb: update to 6.3.3 2020-09-20 21:19:02 +00:00
yoda science/yoda: Update 1.8.2 -> 1.8.3 2020-07-09 00:50:09 +00:00
Makefile Remove expired ports: 2020-09-19 13:01:00 +00:00