Yuri Victorovich 3c860dcbb4 science/pagmo2: Update 2.11.4 -> 2.15.0-90 ... Reported by: portscout		2020-06-10 16:05:16 +00:00
..
2d-rewriter
abinit	Mark BROKEN: fails to build	2020-05-29 08:38:54 +00:00
afni	science/afni: update to 20.1.13	2020-06-04 16:49:57 +00:00
agrum	science/agrum: Update 0.17.2 -> 0.17.3	2020-05-26 02:54:42 +00:00
aircraft-datcom
ALPSCore
antioch
apbs
atompaw
avogadro2
avogadrolibs
bagel
bddsolve
berkeleygw
bodr
brian
buddy
cdcl
cdf
cdk
cdo	Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H	2020-05-16 10:51:44 +00:00
cgnslib	Mark MAKE_JOBS_UNSAFE	2020-06-10 05:22:13 +00:00
cgribex	Update to 1.9.4	2020-05-16 10:51:49 +00:00
checkmol
chemical-mime-data
chemps2
chemtool
chemtool-devel
chrono
clhep
clipper
code_saturne	Update Sphinx	2020-05-11 23:51:58 +00:00
colt
coordgenlibs	science/coordgenlibs: Update 1.4.0 -> 1.4.0-6; Fix the missing file templates.mae problem	2020-05-10 19:36:07 +00:00
cp2k	Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518	2020-05-20 02:27:15 +00:00
cp2k-data	science/cp2k-data: Update 6.1.0 -> 7.1.0	2020-05-25 04:00:02 +00:00
crf++
dalton
datawarrior
dcl
devisor
dftbplus	science/dftbplus: Change to python3.	2020-05-20 00:36:40 +00:00
dkh
dlib-cpp
dlpoly-classic
drawxtl
dvc
eccodes	Mark as BROKEN on powerpc64:	2020-05-18 03:05:44 +00:00
elk
elmerfem
epte
erd
ergo	Some days it does not pay to get out of bed.	2020-05-15 04:25:56 +00:00
erkale
erkale-pseudopotentials
fastcap
fasthenry
fastjet	science/fastjet: Enable plugins; Fix the config program	2020-05-26 17:10:15 +00:00
fisicalab
fleur
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gchemutils
gdma
getdp
ghemical	science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option	2020-05-10 21:40:08 +00:00
ghmm
gnudatalanguage	x11-toolkits/wxgtk30: Update to 3.0.5.1	2020-05-17 05:55:12 +00:00
gpaw-setups
gramps
grib_api
gromacs
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
hepmc3	New port: science/hepmc3: Event record for High Energy Physics Monte Carlo generators/simulation	2020-05-26 16:21:23 +00:00
highfive
hypre	science/hypre: Update 2.18.2 -> 2.19.0	2020-05-27 08:08:16 +00:00
iboview
InsightToolkit
isaac-cfd
jdftx
jmol	science/jmol: Update 14.30.2 -> 14.31.0	2020-05-28 17:29:56 +00:00
jstrack
kalzium	Update KDE's Applications to 20.04.1	2020-05-15 16:52:00 +00:00
kim-api
kst2	science/kst2: prepare for Qt5-5.15	2020-05-18 16:42:25 +00:00
lammps	science/lammps: Update 5May2020 -> 2Jun2020	2020-06-02 02:49:07 +00:00
lamprop
latte
libaec
libccp4
libcint	science/libcint: Update 3.0.19 -> 3.0.20	2020-05-15 15:44:22 +00:00
libctl
libefp
libgeodecomp
libghemical
libgridxc	Mark BROKEN	2020-05-16 10:02:19 +00:00
libint
libint2
libkml	Convert REINPLACE_CMD to patch files	2020-05-08 20:50:41 +00:00
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
lm	Bump PORTREVISION for devel/protobuf shlib change	2020-06-03 18:32:05 +00:00
luscus
madness
maeparser
massxpert	Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).	2020-05-28 08:43:29 +00:00
mbdyn	Mark as BROKEN on powerpc64:	2020-05-18 01:38:12 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb
mpqc
msms
multiwfn
namd
nest
netcdf
netcdf-cxx
netcdf-fortran
nifticlib
nwchem
nwchem-data
octopus	Mark BROKEN	2020-05-16 10:03:40 +00:00
openbabel
openkim
openkim-models
opensim-core
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2	science/pagmo2: Update 2.11.4 -> 2.15.0-90	2020-06-10 16:05:16 +00:00
paje
paraview	Bump PORTREVISION for devel/protobuf shlib change	2020-06-03 18:32:05 +00:00
pcmsolver
PETSc
plumed	science/plumed: Broken on i386	2020-05-23 21:59:28 +00:00
pnetcdf
pulseview	science/pulseview: prepare for Qt5-5.15	2020-05-30 10:09:51 +00:00
py-abipy	math/py-seaborn: Update to 0.10.1	2020-05-31 21:03:37 +00:00
py-asdf
py-ase
py-avogadrolibs
py-cdo
py-chainer	Bump PORTREVISION for devel/protobuf shlib change	2020-06-03 18:32:05 +00:00
py-chainer-chemistry
py-chempy	science/py-chempy: Update 0.7.10 -> 0.7.11	2020-05-30 07:28:06 +00:00
py-coards
py-DendroPy
py-dlib
py-eccodes-python
py-geolinks
py-geomet
py-geometer
py-gpaw	Mark BROKEN	2020-05-17 18:33:45 +00:00
py-GPy
py-GPyOpt
py-gsd
py-h5json
py-h5py
py-kim-query
py-kinematics
py-kliff
py-liac-arff	Add py-liac-arff 2.4.0	2020-05-16 10:49:37 +00:00
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod	science/py-molmod: Update 1.4.5 -> 1.4.7	2020-05-19 00:52:30 +00:00
py-moltemplate	science/py-moltemplate: Update 2.17.7 -> 2.17.8	2020-05-29 05:30:36 +00:00
py-netCDF4
py-obspy
py-oddt
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py
py-phonopy
py-pupynere
py-pyaixi
py-pycsw
py-pydicom
py-PyFR	science/py-PyFR: Update 1.9.0 -> 1.10.0	2020-05-29 05:48:10 +00:00
py-pygeodesy
py-pygeometa
py-pygmo2	New port: science/py-pygmo2: Python platform to perform parallel computations of optimisation tasks	2020-06-09 18:53:01 +00:00
py-pymatgen	- Update WWW	2020-05-26 09:32:48 +00:00
py-pymol	pymol fails to build with python 2.7	2020-05-29 08:42:46 +00:00
py-pyosf
py-PyQuante
py-pysal
py-pyteomics	Add DF, GRAPHICS, TDA, UNIMOD and XML options	2020-05-21 20:44:52 +00:00
py-qcelemental
py-qcengine	Move sysutils/py-cpuinfo -> sysutils/py-py-cpuinfo to match the PyPI name	2020-05-18 18:56:59 +00:00
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-scikit-fuzzy	science/py-scikit-fuzzy: Change to default python3	2020-05-21 00:20:33 +00:00
py-scikit-learn
py-scikit-optimize
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib	science/py-spglib: Update 1.14.1 -> 1.15.1	2020-05-30 09:17:34 +00:00
py-tensorflow	Bump PORTREVISION for devel/protobuf shlib change	2020-06-03 18:32:05 +00:00
py-veusz
py-ws2300
pybrain	Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 4).	2020-05-27 15:31:55 +00:00
pynn
qbox	science/qbox: Update 1.71.1 -> 1.71.2	2020-06-09 23:43:30 +00:00
qcl
qiskit-aer	science/qiskit-aer: Update 0.5.1 -> 0.5.2	2020-06-06 04:41:55 +00:00
qmcpack
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo	Update to 1.5.1	2020-05-16 11:04:45 +00:00
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis	science/scidavis:	2020-05-27 20:10:56 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid	science/simgrid: Update 3.24 -> 3.25	2020-05-30 06:16:04 +00:00
simint
simlib
simsmith	Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6).	2020-05-28 08:43:29 +00:00
smoldyn
sparta
spglib	science/spglib: Update 1.12.2 -> 1.15.1	2020-05-30 05:58:05 +00:00
step	Update KDE's Applications to 20.04.1	2020-05-15 16:52:00 +00:00
svmlight
szip
teem
tfel
tinker
udunits
v_sim
vipster	science/vipster: Update 1.18b-174 -> 1.18b.20200514 (to the current revision)	2020-05-15 03:46:25 +00:00
vmd
voro++
votca
wannier90
wwplot
wxmacmolplt	x11-toolkits/wxgtk30: Update to 3.0.5.1	2020-05-17 05:55:12 +00:00
xcrysden	science/xcrysden: Update 1.5.60 -> 1.6.2	2020-05-16 20:16:48 +00:00
xdrawchem
xfce4-equake-plugin
xtb	new port: science/xtb	2020-05-28 22:05:42 +00:00
yoda	science/yoda: Update 1.8.0 -> 1.8.2	2020-05-26 08:52:41 +00:00
Makefile	New port: science/py-pygmo2: Python platform to perform parallel computations of optimisation tasks	2020-06-09 18:53:01 +00:00