freebsd-ports/biology
2019-03-31 16:57:54 +00:00
..
abyss
artemis
avida
babel
bamtools
bcftools
bedtools
biococoa
bowtie
bowtie2 Mark as broken on aarch64: 2019-03-29 22:13:11 +00:00
bwa
canu
cd-hit
cdbfasta
checkm
chemeq
clustal-omega
clustalw
consed
cytoscape
ddocent
diamond
dsr-pdb
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastqc
fasttree
fastx-toolkit
figtree
fluctuate
freebayes
garlic
gatk
gff2ps
gmap
gperiodic
graphlan
grappa
groopm
hisat2
hmmer
htslib
hyphy
igv
infernal
iolib
iqtree
jalview
jellyfish
kallisto
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-toolkit
ngs-sdk biology/ngs-sdk: Update 2.9.4 -> 2.9.6 2019-03-31 03:31:59 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF - Add LICENSE 2019-03-30 09:01:08 +00:00
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore biology/p5-TrimGalore: Upgrade to 0.6.1 2019-03-24 21:44:17 +00:00
paml
pbbam
pbcopper
pbseqan
pear-merger
phrap
phred
phylip
phyml
plinkseq
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt biology/py-cutadapt: Upgrade to 2.1 2019-03-24 21:20:24 +00:00
py-dnaio biology/py-dnaio: Read and write FASTQ and FASTA 2019-03-24 19:40:26 +00:00
py-fastTSNE biology/py-fastTSNE: Add the PORTSCOUT line 2019-03-31 16:57:54 +00:00
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-loompy
py-macs2
py-orange3-bioinformatics
py-orange3-single-cell
py-pyfaidx
py-pysam
pycogent
pyfasta
python-nexus
rainbow
recombine
ruby-bio
rubygem-bio
samtools
seaview
seqan
seqan1
seqan-apps
seqio
seqtk
seqtools
sim4
slclust
smithwaterman
stacks
stringtie
t_coffee
tabixpp
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene
unanimity
vcflib
vcftools
velvet
wise
Makefile biology/py-dnaio: Read and write FASTQ and FASTA 2019-03-24 19:40:26 +00:00