Tijl Coosemans ab60136c26 Move -fPIC to where Linux puts it so it is limited to a single library.		2017-02-13 22:43:58 +00:00
..
ariadne
artemis
avida
babel
bcftools
bedtools
biococoa
biojava
blat
bowtie
bowtie2	biology/bowtie2: Update to version 2.2.9	2016-12-20 17:01:27 +00:00
bwa	Mark various ports broken on aarch64 and armv6.	2017-01-31 03:40:46 +00:00
cd-hit	biology/cd-hit: Update to bug-fix release 4.6.6	2016-12-20 16:48:12 +00:00
cdbfasta	Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/	2017-01-20 20:33:30 +00:00
chemeq
clustalw
consed
crux
diamond	biology/diamond: Update to version 0.8.36.	2017-02-12 14:04:57 +00:00
emboss
fasta
fasta3
fastdnaml
fastool	Never set WRKSRC when using USE_GITHUB.	2017-01-03 18:12:13 +00:00
fasttree
fastx-toolkit
fluctuate
garlic
gff2ps
gmap
gperiodic
grappa
hmmer
htslib
iolib
jalview
jellyfish	Remove BROKEN_FreeBSD_9	2017-01-01 03:45:12 +00:00
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden	biology/molden: Unbreak port, regenerate checksums, increment PORTREVISION.	2017-02-11 02:06:03 +00:00
mopac
mrbayes
mummer
muscle
ncbi-blast+	biology/ncbi-blast+: Add MAKE_JOBS_UNSAFE	2016-12-22 16:49:16 +00:00
ncbi-toolkit
njplot
p5-AcePerl	Move -fPIC to where Linux puts it so it is limited to a single library.	2017-02-13 22:43:58 +00:00
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate	- Add p5-Bio-Coordinate 1.007001	2016-12-19 15:54:39 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics	Bump PORTREVISION for ports affected by the fix the last commit.	2017-01-31 16:21:45 +00:00
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl	Bump PORTREVISION for ports affected by the fix the last commit.	2017-01-31 16:21:45 +00:00
p5-BioPerl-Run	Bump PORTREVISION for ports affected by the fix the last commit.	2017-01-31 16:21:45 +00:00
p5-transdecoder	Never set WRKSRC when using USE_GITHUB.	2017-01-03 18:12:13 +00:00
paml
phrap
phred
phylip
phyml
plink
plinkseq
primer3
protomol
psi88
py-biom-format
py-biopython
pycogent
pyfasta
python-nexus
recombine
ruby-bio
rubygem-bio	Update to 1.5.1	2017-02-06 23:03:17 +00:00
samtools
seaview
seqan
seqan1
seqan-apps	- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL	2017-01-09 13:16:49 +00:00
seqio
seqtools	Remove BROKEN_FreeBSD_9	2017-01-01 03:45:12 +00:00
sim4
slclust	Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/	2017-01-20 20:33:30 +00:00
ssaha
t_coffee
tinker
treepuzzle
treeviewx
trimmomatic
tRNAscan-SE
ugene	- Remove always-true/false conditions after FreeBSD 9, 10.1, 10.2 EOL	2017-01-09 13:16:49 +00:00
vcftools	Assume "pkg-config zlib" works after 9.x reached EOL	2017-01-03 17:06:49 +00:00
velvet
wise
xmolwt
Makefile	Move devel/rubygem-bio to biology/rubygem-bio	2017-02-05 04:26:56 +00:00