53 lines
1.5 KiB
Makefile
53 lines
1.5 KiB
Makefile
PORTNAME= bolt-lmm
|
|
DISTVERSION= 2.3.6
|
|
PORTREVISION= 3
|
|
CATEGORIES= biology
|
|
MASTER_SITES= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/downloads/
|
|
DISTNAME= BOLT-LMM_v${PORTVERSION}
|
|
|
|
MAINTAINER= jwb@FreeBSD.org
|
|
COMMENT= Mixed model association testing and variance component analysis
|
|
WWW= https://data.broadinstitute.org/alkesgroup/BOLT-LMM/
|
|
|
|
LICENSE= GPLv3
|
|
LICENSE_FILE= ${WRKSRC}/license.txt
|
|
|
|
LIB_DEPENDS= libnlopt.so:math/nlopt \
|
|
libopenblas.so:math/openblas \
|
|
libboost_program_options.so:devel/boost-libs
|
|
|
|
USES= gmake
|
|
|
|
BUILD_WRKSRC= ${WRKDIR}/${DISTNAME}/src
|
|
INSTALL_WRKSRC= ${WRKDIR}/${DISTNAME}/src
|
|
CXXFLAGS_i386= -DUSE_SSE -msse -msse2
|
|
CXXFLAGS_amd64= -DUSE_SSE
|
|
MAKE_ARGS= BOOST_INSTALL_DIR=${LOCALBASE} \
|
|
NLOPT_INSTALL_DIR=${LOCALBASE} \
|
|
ZLIB_STATIC_DIR=/usr/lib \
|
|
LIBSTDCXX_STATIC_DIR=/usr/lib \
|
|
GLIBC_STATIC_DIR=/usr/lib \
|
|
SSEFLAGS="" \
|
|
MEMCPY="" \
|
|
LLAPACK="-lopenblas"
|
|
|
|
CONFLICTS_INSTALL= rubygem-bolt # bin/bolt
|
|
|
|
PORTEXAMPLES= *
|
|
|
|
OPTIONS_DEFINE= EXAMPLES
|
|
|
|
pre-configure:
|
|
@${RM} ${WRKSRC}/example/*.orig ${WRKSRC}/bolt
|
|
@${REINPLACE_CMD} -e 's|tables/|${DATADIR}/tables/|g' \
|
|
${BUILD_WRKSRC}/BoltParams.cpp
|
|
@${REINPLACE_CMD} -e 's|../tables/|${DATADIR}/tables/|g' \
|
|
${WRKSRC}/example/run_example.sh
|
|
|
|
do-install:
|
|
${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/bolt ${STAGEDIR}${PREFIX}/bin
|
|
(cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR})
|
|
(cd ${WRKSRC} && ${COPYTREE_SHARE} tables ${STAGEDIR}${DATADIR})
|
|
|
|
.include <bsd.port.mk>
|