cd4c80ae90
- Unmark BROKEN - Start adding support for Jemboss Java-based GUI (not active yet) PR: 40198 ; many private requests Submitted by: Tilman Linneweh <tilman@arved.de> (2.4.1 update)
1681 lines
62 KiB
Plaintext
1681 lines
62 KiB
Plaintext
%%PLIST_EMNU%%bin/emnu
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%%PLIST_EMNU%%share/EMBOSS/acd/emnu.acd
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%%PLIST_HMMER%%bin/ealistat
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%%PLIST_HMMER%%bin/ehmmalign
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%%PLIST_HMMER%%bin/ehmmcalibrate
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%%PLIST_HMMER%%bin/ehmmconvert
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%%PLIST_HMMER%%bin/ehmmpfam
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%%PLIST_HMMER%%lib/libhmmer.so
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%%PLIST_PHYLIP%%bin/epenny
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%%PLIST_PHYLIP%%bin/eprotdist
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%%PLIST_PHYLIP%%bin/erestml
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%%PLIST_PHYLIP%%bin/eseqboot
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%%PLIST_PHYLIP%%share/EMBOSS/acd/econtml.acd
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%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapars.acd
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%%PLIST_PHYLIP%%share/EMBOSS/acd/ednapenny.acd
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%%PLIST_PHYLIP%%share/EMBOSS/acd/edollop.acd
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%%PLIST_PHYLIP%%share/EMBOSS/acd/efactor.acd
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%%PLIST_PHYLIP%%share/EMBOSS/acd/erestml.acd
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%%PLIST_PHYLIP%%share/EMBOSS/acd/eseqboot.acd
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%%PLIST_TOPO%%bin/topo
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%%PLIST_TOPO%%share/EMBOSS/acd/topo.acd
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bin/abiview
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bin/acdc
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bin/antigenic
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bin/backtranseq
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bin/banana
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bin/biosed
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bin/btwisted
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bin/cai
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bin/chaos
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bin/charge
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bin/checktrans
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bin/chips
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bin/cirdna
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bin/codcmp
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bin/coderet
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bin/compseq
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bin/cons
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bin/contacts
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bin/cpgplot
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bin/cpgreport
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bin/cusp
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bin/cutgextract
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bin/cutseq
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bin/dan
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bin/dbiblast
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bin/dbifasta
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bin/dbiflat
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bin/dbigcg
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bin/degapseq
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bin/descseq
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bin/dichet
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bin/diffseq
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bin/digest
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bin/distmat
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bin/domainer
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bin/dotmatcher
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bin/dotpath
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bin/dottup
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bin/dreg
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bin/einverted
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bin/embossdata
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bin/embossversion
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bin/emma
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bin/emowse
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bin/entret
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bin/equicktandem
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bin/est2genome
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bin/etandem
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bin/extractfeat
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bin/extractseq
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bin/findkm
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bin/freak
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bin/fuzznuc
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bin/fuzzpro
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bin/fuzztran
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bin/garnier
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bin/geecee
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bin/getorf
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bin/helixturnhelix
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bin/hmoment
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bin/iep
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bin/infoalign
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bin/infoseq
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bin/isochore
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bin/lindna
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bin/listor
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bin/marscan
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bin/maskfeat
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bin/maskseq
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bin/matcher
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bin/megamerger
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bin/merger
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bin/msbar
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bin/mwfilter
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bin/needle
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bin/newcpgreport
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bin/newcpgseek
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bin/newseq
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bin/noreturn
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bin/notseq
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bin/nrscope
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bin/nthseq
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bin/octanol
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bin/oddcomp
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bin/palindrome
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bin/pasteseq
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bin/patmatdb
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bin/patmatmotifs
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bin/pepcoil
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bin/pepinfo
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bin/pepnet
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bin/pepstats
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bin/pepwheel
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bin/pepwindow
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bin/pepwindowall
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bin/plotcon
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bin/plotorf
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bin/polydot
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bin/preg
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bin/prettyplot
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bin/prettyseq
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bin/primersearch
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bin/printsextract
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bin/profit
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bin/prophecy
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bin/prophet
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bin/prosextract
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bin/pscan
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bin/psiblasts
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bin/rebaseextract
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bin/recoder
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bin/redata
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bin/remap
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bin/restover
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bin/restrict
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bin/revseq
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bin/runJemboss.csh
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bin/scopalign
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bin/scope
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bin/seealso
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bin/seqmatchall
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bin/seqret
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bin/seqretsplit
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bin/showalign
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bin/showdb
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bin/showfeat
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bin/showorf
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bin/showseq
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bin/shuffleseq
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bin/sigcleave
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bin/siggen
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bin/sigscan
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bin/silent
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bin/splitter
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bin/stretcher
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bin/supermatcher
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bin/swissparse
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bin/syco
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bin/textsearch
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bin/tfextract
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bin/tfm
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bin/tfscan
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bin/tmap
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bin/transeq
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bin/trimest
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bin/trimseq
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bin/vectorstrip
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bin/water
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bin/wobble
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bin/wordcount
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bin/wordmatch
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bin/wossname
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etc/emboss.default.sample
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lib/libajax.a
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lib/libajax.la
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lib/libajax.so
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lib/libajax.so.1
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lib/libajaxg.a
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lib/libajaxg.la
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lib/libajaxg.so
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lib/libajaxg.so.1
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lib/libnucleus.a
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lib/libnucleus.la
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lib/libnucleus.so
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lib/libnucleus.so.1
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lib/libplplot.a
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lib/libplplot.la
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lib/libplplot.so
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lib/libplplot.so.5
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share/EMBOSS/acd/abiview.acd
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share/EMBOSS/acd/ajbad.acd
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share/EMBOSS/acd/ajfeatest.acd
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share/EMBOSS/acd/ajtest.acd
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share/EMBOSS/acd/alignwrap.acd
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share/EMBOSS/acd/antigenic.acd
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share/EMBOSS/acd/backtranseq.acd
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share/EMBOSS/acd/banana.acd
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share/EMBOSS/acd/biosed.acd
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share/EMBOSS/acd/btwisted.acd
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share/EMBOSS/acd/cai.acd
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share/EMBOSS/acd/chaos.acd
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share/EMBOSS/acd/charge.acd
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share/EMBOSS/acd/checktrans.acd
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share/EMBOSS/acd/chips.acd
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share/EMBOSS/acd/cirdna.acd
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share/EMBOSS/acd/codcmp.acd
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share/EMBOSS/acd/coderet.acd
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share/EMBOSS/acd/codes.english
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share/EMBOSS/acd/complex.acd
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share/EMBOSS/acd/compseq.acd
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share/EMBOSS/acd/cons.acd
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share/EMBOSS/acd/contacts.acd
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share/EMBOSS/acd/corbatest.acd
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share/EMBOSS/acd/cpgplot.acd
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share/EMBOSS/acd/cpgreport.acd
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share/EMBOSS/acd/cusp.acd
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share/EMBOSS/acd/cutgextract.acd
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share/EMBOSS/acd/cutseq.acd
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share/EMBOSS/acd/dan.acd
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share/EMBOSS/acd/dbiblast.acd
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share/EMBOSS/acd/dbifasta.acd
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share/EMBOSS/acd/dbiflat.acd
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share/EMBOSS/acd/dbigcg.acd
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share/EMBOSS/acd/degapseq.acd
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share/EMBOSS/acd/demoalign.acd
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share/EMBOSS/acd/demofeatures.acd
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share/EMBOSS/acd/demolist.acd
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share/EMBOSS/acd/demoreport.acd
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share/EMBOSS/acd/demosequence.acd
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share/EMBOSS/acd/demostring.acd
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share/EMBOSS/acd/demotable.acd
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share/EMBOSS/acd/descseq.acd
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share/EMBOSS/acd/dichet.acd
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share/EMBOSS/acd/diffseq.acd
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share/EMBOSS/acd/digest.acd
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share/EMBOSS/acd/distmat.acd
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share/EMBOSS/acd/domainer.acd
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share/EMBOSS/acd/dotmatcher.acd
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share/EMBOSS/acd/dotpath.acd
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share/EMBOSS/acd/dottup.acd
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share/EMBOSS/acd/dreg.acd
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share/EMBOSS/acd/einverted.acd
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share/EMBOSS/acd/embossdata.acd
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share/EMBOSS/acd/embossversion.acd
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share/EMBOSS/acd/emma.acd
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share/EMBOSS/acd/emowse.acd
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share/EMBOSS/acd/eprimer3.acd
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share/EMBOSS/acd/equicktandem.acd
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share/EMBOSS/acd/est2genome.acd
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share/EMBOSS/acd/etandem.acd
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share/EMBOSS/acd/extractfeat.acd
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share/EMBOSS/acd/extractseq.acd
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share/EMBOSS/acd/findkm.acd
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share/EMBOSS/acd/freak.acd
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share/EMBOSS/acd/fuzznuc.acd
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share/EMBOSS/acd/fuzzpro.acd
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share/EMBOSS/acd/fuzztran.acd
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share/EMBOSS/acd/garnier.acd
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share/EMBOSS/acd/geecee.acd
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share/EMBOSS/acd/getorf.acd
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share/EMBOSS/acd/helixturnhelix.acd
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share/EMBOSS/acd/histogramtest.acd
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share/EMBOSS/acd/hmoment.acd
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share/EMBOSS/acd/iep.acd
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share/EMBOSS/acd/infoalign.acd
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share/EMBOSS/acd/infoseq.acd
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share/EMBOSS/acd/interface.acd
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share/EMBOSS/acd/isochore.acd
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share/EMBOSS/acd/lindna.acd
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share/EMBOSS/acd/listor.acd
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share/EMBOSS/acd/marscan.acd
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share/EMBOSS/acd/maskfeat.acd
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share/EMBOSS/acd/maskseq.acd
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share/EMBOSS/acd/matcher.acd
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share/EMBOSS/acd/megamerger.acd
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share/EMBOSS/acd/merger.acd
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share/EMBOSS/acd/msbar.acd
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share/EMBOSS/acd/mwfilter.acd
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share/EMBOSS/acd/needle.acd
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share/EMBOSS/acd/newcpgreport.acd
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share/EMBOSS/acd/newcpgseek.acd
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share/EMBOSS/acd/newseq.acd
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share/EMBOSS/acd/noreturn.acd
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share/EMBOSS/acd/notseq.acd
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share/EMBOSS/acd/nrscope.acd
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share/EMBOSS/acd/nthseq.acd
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share/EMBOSS/acd/octanol.acd
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share/EMBOSS/acd/oddcomp.acd
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share/EMBOSS/acd/palindrome.acd
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share/EMBOSS/acd/pasteseq.acd
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share/EMBOSS/acd/patmatdb.acd
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share/EMBOSS/acd/patmatmotifs.acd
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share/EMBOSS/acd/patmattest.acd
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share/EMBOSS/acd/pdbtosp.acd
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share/EMBOSS/acd/pepcoil.acd
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share/EMBOSS/acd/pepinfo.acd
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share/EMBOSS/acd/pepnet.acd
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share/EMBOSS/acd/pepstats.acd
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share/EMBOSS/acd/pepwheel.acd
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share/EMBOSS/acd/pepwindow.acd
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share/EMBOSS/acd/pepwindowall.acd
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share/EMBOSS/acd/plotcon.acd
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share/EMBOSS/acd/plotorf.acd
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share/EMBOSS/acd/polydot.acd
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share/EMBOSS/acd/preg.acd
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share/EMBOSS/acd/prettyplot.acd
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share/EMBOSS/acd/prettyseq.acd
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share/EMBOSS/acd/prima.acd
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share/EMBOSS/acd/primers.acd
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share/EMBOSS/acd/primersearch.acd
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share/EMBOSS/acd/printsextract.acd
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share/EMBOSS/acd/profit.acd
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share/EMBOSS/acd/prophecy.acd
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share/EMBOSS/acd/prophet.acd
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share/EMBOSS/acd/prosextract.acd
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share/EMBOSS/acd/pscan.acd
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share/EMBOSS/acd/psiblasts.acd
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share/EMBOSS/acd/rebaseextract.acd
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share/EMBOSS/acd/recoder.acd
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share/EMBOSS/acd/redata.acd
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share/EMBOSS/acd/remap.acd
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share/EMBOSS/acd/restover.acd
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share/EMBOSS/acd/restrict.acd
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share/EMBOSS/acd/revseq.acd
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share/EMBOSS/acd/scopalign.acd
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share/EMBOSS/acd/scopparse.acd
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share/EMBOSS/acd/scope.acd
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share/EMBOSS/acd/seealso.acd
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share/EMBOSS/acd/seqinfo.acd
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share/EMBOSS/acd/seqmatchall.acd
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share/EMBOSS/acd/seqnr.acd
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share/EMBOSS/acd/seqret.acd
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share/EMBOSS/acd/seqretall.acd
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share/EMBOSS/acd/seqretallfeat.acd
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share/EMBOSS/acd/seqretset.acd
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share/EMBOSS/acd/seqretsingle.acd
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share/EMBOSS/acd/seqretsplit.acd
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share/EMBOSS/acd/seqsort.acd
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share/EMBOSS/acd/showalign.acd
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share/EMBOSS/acd/showdb.acd
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share/EMBOSS/acd/showfeat.acd
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share/EMBOSS/acd/showorf.acd
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share/EMBOSS/acd/showseq.acd
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share/EMBOSS/acd/shuffleseq.acd
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share/EMBOSS/acd/sigcleave.acd
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share/EMBOSS/acd/siggen.acd
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share/EMBOSS/acd/sigscan.acd
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share/EMBOSS/acd/silent.acd
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share/EMBOSS/acd/splitter.acd
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