Yuri Victorovich 8a05aed32b biology/py-fastTSNE: Add the PORTSCOUT line		2019-03-31 16:57:54 +00:00
..
abyss	New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end sequence assembler	2019-02-25 07:56:45 +00:00
artemis
avida
babel
bamtools
bcftools
bedtools	biology/bedtools: unbreak with libc++ 8	2019-03-04 06:55:08 +00:00
biococoa
bowtie
bowtie2	Mark as broken on aarch64:	2019-03-29 22:13:11 +00:00
bwa
canu
cd-hit	biology/cd-hit: Upgrade to 4.8.1	2019-03-14 23:59:47 +00:00
cdbfasta
checkm
chemeq
clustal-omega
clustalw
consed
cytoscape
ddocent
diamond
dsr-pdb
emboss
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastqc
fasttree
fastx-toolkit
figtree
fluctuate
freebayes
garlic
gatk
gff2ps
gmap
gperiodic
graphlan
grappa
groopm
hisat2
hmmer
htslib
hyphy
igv	biology/igv: Update 2.4.16 -> 2.4.19	2019-02-23 21:23:51 +00:00
infernal
iolib
iqtree	biology/iqtree: Update to version 1.6.10	2019-02-21 14:33:43 +00:00
jalview
jellyfish
kallisto	kallisto: Upgrade to 0.45.1, unbundle hstlib	2019-02-24 20:32:19 +00:00
lagan
lamarc
libgtextutils
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden
mopac
mrbayes
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-toolkit
ngs-sdk	biology/ngs-sdk: Update 2.9.4 -> 2.9.6	2019-03-31 03:31:59 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF	- Add LICENSE	2019-03-30 09:01:08 +00:00
p5-BioPerl	Update to 1.007005 (1.7.5)	2019-02-22 19:54:12 +00:00
p5-BioPerl-Run	Update to 1.007003	2019-02-20 20:46:58 +00:00
p5-transdecoder
p5-TrimGalore	biology/p5-TrimGalore: Upgrade to 0.6.1	2019-03-24 21:44:17 +00:00
paml	biology/paml: Update to version 4.9i	2019-02-26 15:12:42 +00:00
pbbam
pbcopper
pbseqan
pear-merger
phrap
phred
phylip
phyml
plinkseq
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt	biology/py-cutadapt: Upgrade to 2.1	2019-03-24 21:20:24 +00:00
py-dnaio	biology/py-dnaio: Read and write FASTQ and FASTA	2019-03-24 19:40:26 +00:00
py-fastTSNE	biology/py-fastTSNE: Add the PORTSCOUT line	2019-03-31 16:57:54 +00:00
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-loompy
py-macs2
py-orange3-bioinformatics
py-orange3-single-cell
py-pyfaidx
py-pysam
pycogent
pyfasta
python-nexus
rainbow
recombine
ruby-bio
rubygem-bio
samtools
seaview
seqan
seqan1
seqan-apps
seqio
seqtk
seqtools
sim4
slclust
smithwaterman
stacks
stringtie
t_coffee
tabixpp
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
ugene
unanimity	biology/unanimity: Upgrade to 3.4.1	2019-02-24 16:04:58 +00:00
vcflib
vcftools
velvet
wise
Makefile	biology/py-dnaio: Read and write FASTQ and FASTA	2019-03-24 19:40:26 +00:00