| .. |
|
ariadne
|
|
|
|
artemis
|
|
|
|
avida
|
|
|
|
babel
|
|
|
|
bamtools
|
biology/bamtools: API and toolkit for handling BAM files
|
2018-03-28 13:26:31 +00:00 |
|
bcftools
|
|
|
|
bedtools
|
|
|
|
biococoa
|
|
|
|
blat
|
|
|
|
bowtie
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
bowtie2
|
|
|
|
bwa
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
canu
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
cd-hit
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
cdbfasta
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
|
|
|
consed
|
|
|
|
crux
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
diamond
|
biology/diamond: Update to version 0.9.19
|
2018-03-17 15:29:13 +00:00 |
|
emboss
|
|
|
|
fasta
|
|
|
|
fasta3
|
|
|
|
fastdnaml
|
|
|
|
fastool
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
fastqc
|
|
|
|
fasttree
|
Mark the latest version broken on armvX. Note: 2.1.8.3 built ok.
|
2018-03-18 13:38:23 +00:00 |
|
fastx-toolkit
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
fluctuate
|
|
|
|
garlic
|
Return maho@'s ports to the pool after his commit bit expired.
|
2018-03-11 11:20:43 +00:00 |
|
gff2ps
|
|
|
|
gmap
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
gperiodic
|
|
|
|
grappa
|
|
|
|
hmmer
|
|
|
|
htslib
|
|
|
|
iolib
|
|
|
|
iqtree
|
biology/iqtree: Update to version 1.6.3
|
2018-03-23 01:22:47 +00:00 |
|
jalview
|
|
|
|
jellyfish
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
kallisto
|
|
|
|
lagan
|
|
|
|
lamarc
|
|
|
|
libgtextutils
|
biology/libgtextutils: Unbreak for FreeBSD 12
|
2018-03-29 15:41:07 +00:00 |
|
libsbml
|
|
|
|
linux-foldingathome
|
|
|
|
mafft
|
|
|
|
mapm3
|
|
|
|
migrate
|
Mark broken on armvX and mips.
|
2018-03-18 13:48:07 +00:00 |
|
molden
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
mopac
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
mrbayes
|
|
|
|
mummer
|
|
|
|
muscle
|
|
|
|
ncbi-blast+
|
biology/ncbi-blast+: Upgrade to 2.7.1
|
2018-03-27 18:04:21 +00:00 |
|
ncbi-toolkit
|
|
|
|
njplot
|
|
|
|
p5-AcePerl
|
|
|
|
p5-Bio-ASN1-EntrezGene
|
|
|
|
p5-Bio-Coordinate
|
|
|
|
p5-Bio-Das
|
|
|
|
p5-Bio-Das-Lite
|
|
|
|
p5-Bio-FeatureIO
|
|
|
|
p5-Bio-GFF3
|
|
|
|
p5-Bio-Glite
|
|
|
|
p5-Bio-Graphics
|
|
|
|
p5-Bio-MAGETAB
|
|
|
|
p5-Bio-NEXUS
|
|
|
|
p5-Bio-Phylo
|
|
|
|
p5-Bio-SCF
|
|
|
|
p5-BioPerl
|
|
|
|
p5-BioPerl-Run
|
|
|
|
p5-transdecoder
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
p5-TrimGalore
|
|
|
|
paml
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
|
|
|
phyml
|
Remove now-useless, commented-out lines.
|
2018-03-10 23:35:03 +00:00 |
|
plink
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
plinkseq
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
primer3
|
|
|
|
protomol
|
|
|
|
psi88
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
py-biom-format
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
py-biopython
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
py-bx-python
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
py-cutadapt
|
Canonicalize PyPi WWWs:
|
2018-02-08 20:18:08 +00:00 |
|
py-macs2
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
py-pysam
|
biology/py-pysam: Update to 0.14.1
|
2018-03-21 08:12:32 +00:00 |
|
pycogent
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
pyfasta
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
python-nexus
|
|
|
|
recombine
|
|
|
|
ruby-bio
|
|
|
|
rubygem-bio
|
|
|
|
samtools
|
|
|
|
seaview
|
biology/seaview: Update version 4.6.2=>4.6.3
|
2018-01-05 17:40:41 +00:00 |
|
seqan
|
biology/seqan-apps, biology/seqan: Update to 2.4.0
|
2018-03-10 06:21:37 +00:00 |
|
seqan1
|
|
|
|
seqan-apps
|
biology/seqan-apps, biology/seqan: Update to 2.4.0
|
2018-03-10 06:21:37 +00:00 |
|
seqio
|
|
|
|
seqtools
|
|
|
|
sim4
|
|
|
|
slclust
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
ssaha
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
stacks
|
biology/stacks: Software pipeline for building loci from short-read sequences
|
2018-03-31 13:16:05 +00:00 |
|
t_coffee
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
tinker
|
Bump PORTREVISIONs of all users of math/mpc that we just updated to
|
2018-03-10 17:46:04 +00:00 |
|
treepuzzle
|
|
|
|
trimmomatic
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
tRNAscan-SE
|
|
|
|
ugene
|
Update Qt5 ports to 5.9.3.
|
2018-01-06 21:30:31 +00:00 |
|
vcftools
|
Multiple ports:
|
2018-01-31 01:07:07 +00:00 |
|
velvet
|
- Convert to option helper install target (add OPTIONS_DEFINE=DOCS
|
2018-01-11 18:09:00 +00:00 |
|
wise
|
|
|
|
xmolwt
|
|
|
|
Makefile
|
biology/stacks: Software pipeline for building loci from short-read sequences
|
2018-03-31 13:16:05 +00:00 |
56d5a1146f