freebsd-ports/science
Steve Wills f64d997379 many ruby/rubygem ports: death of rubyforge.org
rubyforge.org shutdown on May 15, 2014. This commit accounts for that by doing
several things:

- Deprecate ruby that had only rubyforge.org as MASTER_SITES (and so are now
  only fetchable via our cache)
- Deprecate ports that depend on those
- Update the WWW pkg-descr line that points to rubyforge.org for rubygem ports
  (which are still fetchable from rubygems.org)

The next step will be to remove rubyforge.org from bsd.sites.mk, after these
deprecated ports are deleted.

Phabric:	D591
With hat:	ruby
Approved by:	portmgr (because of committing to unstaged graphics/mingplot port)
2014-08-19 15:35:35 +00:00
..
2d-rewriter
2dhf
abinit math/gsl: 2014-08-17 13:09:56 +00:00
afni math/gsl: 2014-08-17 13:09:56 +00:00
avogadro
bddsolve
bft
bodr
brian
buddy
cdcl
cdf
cdo
cgnslib
cgribex
checkmol
chemical-mime-data
chemtool
chemtool-devel
clhep
colt
crf++
dcl
devisor
dlpoly-classic
dtiquery
ecs
elmer-eio
elmer-hutiter
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost
epte
fastcap
fasthenry
fisicalab math/gsl: 2014-08-17 13:09:56 +00:00
fvcom - Update to 4.4.0 2014-08-15 21:08:21 +00:00
fvcom-mpi - Update to 4.4.0 2014-08-15 21:08:21 +00:00
fvm
g3data
gamess
gchemutils
getdp math/gsl: 2014-08-17 13:09:56 +00:00
ghemical - Stagify 2014-08-06 16:05:23 +00:00
ghmm
gnudatalanguage math/gsl: 2014-08-17 13:09:56 +00:00
gramps
gromacs science/gromacs: Upgrade version 4.6.5 => 5.0 2014-08-10 00:03:09 +00:00
gsmc
gtamsanalyzer Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
gwyddion Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
h5utils
harminv - Switch to USES=libtool, drop .la files 2014-08-18 10:56:31 +00:00
hdf
hdf5
hdf-java
hs-bio - Update The Glorious Glasgow Haskell Compiler to version 7.8.3 2014-08-10 22:34:50 +00:00
InsightToolkit
isaac-cfd
jmol
jstrack Mark BROKEN: Checksum and size mismatch 2014-08-01 17:26:45 +00:00
kalzium Upgrade OpenEXR and ilmbase to 2.2.0. 2014-08-15 20:37:31 +00:00
kst2 math/gsl: 2014-08-17 13:09:56 +00:00
lamprop science/lamprop: switch to USES=python 2014-08-16 11:42:41 +00:00
libctl
libghemical - Switch to USES=libtool, drop .la files 2014-08-06 16:06:22 +00:00
libint - Stagify 2014-08-06 16:06:55 +00:00
libkml
liblinear
liboglappth
libquantum
libsvm
libsvm-python
linsmith
massxpert
mbdyn
mcstas
medit
meep
mei
metaf2xml
minc
minc2
mol2ps
mpb
mpqc - Bump PORTREVISION to force rebuild of .la file 2014-08-06 23:57:20 +00:00
mpqc-mpich
ncs
netcdf
netcdf-cxx - Use USE_GITHUB 2014-08-15 17:27:48 +00:00
netcdf-fortran - Cleanup Makefile 2014-08-17 09:56:47 +00:00
nifticlib
openbabel
openkim
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-PerlMol
p5-Physics-Unit
paje Bump PORTREVISION on more ports that depend on libgcrypt after the update 2014-08-05 22:13:29 +00:00
paraview
pnetcdf
psi3
psychopy
pulseview science/pulseview: Remove unnecessary RUN_DEPENDS 2014-08-03 16:16:21 +00:00
py-coards
py-DendroPy
py-h5py
py-hcluster
py-mdp
py-mlpy math/gsl: 2014-08-17 13:09:56 +00:00
py-netCDF4
py-obspy
py-paida science/py-paida: support stage 2014-08-05 13:22:35 +00:00
py-pupynere
py-pyaixi
py-pydap
py-pydicom
py-scikit-learn
py-scimath
py-scipy
py-ws2300
pybrain
pycdf science/pycdf: support stage and use auto plist 2014-08-05 13:27:44 +00:00
pynn
pyteomics
pyteomics.biolccc
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-snow
R-cran-som
ruby-dcl many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
ruby-gphys many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
ruby-netcdf many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
rubygem-ai4r many ruby/rubygem ports: death of rubyforge.org 2014-08-19 15:35:35 +00:00
rubygem-netcdf
sigrok-cli
sigrok-firmware Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00
sigrok-firmware-fx2lafw Add new port: science/sigrok-firmware-fx2lafw 2014-08-03 22:24:50 +00:00
sigrok-firmware-utils Add new port: science/sigrok-firmware-utils 2014-08-03 22:09:07 +00:00
silo
simlib
simsmith
step math/gsl: 2014-08-17 13:09:56 +00:00
svmlight In some straightforward cases, protect documentation behind 2014-08-04 03:40:14 +00:00
szip
udunits
v_sim
veusz
vmd
voro++
x11iraf
xfce4-equake-plugin
xmakemol
xmds
Makefile Add new port: science/sigrok-firmware 2014-08-03 22:37:51 +00:00