freebsd-ports/science
Matthew Rezny e6acde078c Consolidate the Mesa ports, update to 17.0.4, and add Wayland option
* libGL, libEGL, libglesv2, libglapi, and gbm have been moved into mesa-libs,
  graphics/dri has been renamed to mesa-dri, and USE_GL has been adjusted
* mesa-libs has a new WAYLAND option that enables platform support in libEGL
* mesa-dri now depends on graphics/s2tc for compressed texture support [1]
* re-remove obsolete dependency on makedepends [2]
* correct sed fix backported from 17.1 [3]

PR:		218799 (exp-run), 212762 [1], 218552 [2], 218562 [3]
Submitted by:	dbn [1], jbeich [2,3]
Reported by:	afiskon@devzen.ru [1]
Reviewed by:	kwm, johalun0@gmail.com
Approved by:	portmgr, swills (mentor)
Differential Revision:  https://reviews.freebsd.org/D10448
2017-05-12 18:46:53 +00:00
..
2d-rewriter
afni Fix shebangs 2017-05-04 05:26:01 +00:00
avogadro - Fix build with gcc5 2017-05-06 15:17:38 +00:00
bddsolve devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
bft
bodr - Add LICENSE 2017-05-02 09:00:11 +00:00
brian
buddy
cdcl
cdf Mark some ports failing on aarch64, and, in a few cases, other tier-2 2017-05-03 01:14:05 +00:00
cdo Update to 1.8.1 2017-04-13 19:32:03 +00:00
cgnslib Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
cgribex
checkmol - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:48:32 +00:00
chemical-mime-data
chemtool
chemtool-devel
clhep Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
colt
crf++
dcl Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
devisor
dlpoly-classic Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
ecs
epte
fastcap
fasthenry
fisicalab Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
fvcom Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
fvcom-mpi
fvm Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
gchemutils
getdp Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
ghemical Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
ghmm
gnudatalanguage Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
gramps
grib_api Update to 1.21.0 2017-04-02 02:37:25 +00:00
gromacs devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
gsmc
gtamsanalyzer
gwyddion - localbaes 2017-04-21 10:58:05 +00:00
h5utils
harminv Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hdf Mark some ports failing on aarch64, and, in a few cases, other tier-2 2017-05-03 01:14:05 +00:00
hdf5 Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hdf5-18 Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
hs-bio
iboview Consolidate the Mesa ports, update to 17.0.4, and add Wayland option 2017-05-12 18:46:53 +00:00
InsightToolkit science/InsightToolkit: Fix build with clang 4.0 2017-04-15 03:01:23 +00:00
isaac-cfd Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
jstrack
kalzium Chase ffmpeg 3.3 update (ABI changes) 2017-04-25 08:20:30 +00:00
kst2 Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
lamprop
libaec
libctl Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
libgeodecomp devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
libghemical Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
libint Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
libkml devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
liblinear
liboglappth
libquantum
libsvm - Sort out options (for instance, OPTIMIZED_CFLAGS does not belong to python slave port) 2017-04-12 09:56:35 +00:00
libsvm-python
libxc Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
linsmith
massxpert Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mbdyn Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mcstas
mcstas-comps
medit
meep Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mei
metaf2xml
minc2
mol2ps - Bump PORTREVISION. Freepascal was updated 2017-02-26 17:50:29 +00:00
mpb Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mpqc Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
mpqc-mpich
ncs Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
netcdf Add LICENSE 2017-04-17 16:05:56 +00:00
netcdf-cxx
netcdf-fortran Add LICENSE 2017-04-17 16:06:01 +00:00
nifticlib
openbabel Provide more descriptive error messages for ports failing on powerpc64. 2017-04-30 04:35:10 +00:00
openkim Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
orthanc devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
orthanc-dicomweb devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
orthanc-postgresql devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
orthanc-webviewer devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
paje
paraview
pnetcdf Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
psychopy Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
pulseview devel/boost-*: update to 1.64.0 2017-05-02 06:48:10 +00:00
py-cdo
py-coards
py-DendroPy Update to 4.2.0 2017-03-29 21:16:07 +00:00
py-h5py
py-hcluster
py-mdp
py-mlpy Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
py-netCDF4 science/py-netCDF4: Update version 1.2.4=>1.2.7 2017-02-25 19:07:33 +00:00
py-obspy Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-paida
py-pupynere
py-pyaixi
py-pydicom
py-pysal
py-pyteomics
py-pyteomics.biolccc
py-scikit-fuzzy
py-scikit-learn Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-scikit-sparse Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
py-scimath
py-scipy - Fix build with gcc5 2017-05-05 14:42:02 +00:00
py-ws2300
pybrain
pycdf
pynn
qcl
qtresistors
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071 - Update to 1.6-8 2017-05-07 07:46:15 +00:00
R-cran-eco
R-cran-Epi - Update to 2.12 2017-05-07 07:39:46 +00:00
R-cran-epicalc
R-cran-etm
R-cran-snow
R-cran-som
rubygem-ai4r
rubygem-cdo Update to 1.3.3 2017-02-25 09:55:29 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Update my email address 2017-05-08 17:21:49 +00:00
simlib
simsmith
step Update math/gsl to 2.3 2017-05-02 05:26:40 +00:00
svmlight
szip
tfel Cleanup. 2017-05-04 20:30:48 +00:00
udunits
v_sim Bump PORTREVISIONs for ports depending on the canonical version of GCC and 2017-04-01 15:23:30 +00:00
veusz
vmd science/vmd: unbreak build 2017-04-04 05:19:52 +00:00
voro++
xfce4-equake-plugin - Update to 1.3.8.1 2017-03-05 08:09:35 +00:00
xmakemol
Makefile science/iboview: new port. iboview is an advanced program for analyzing molecular electronic structure. 2017-05-02 02:46:41 +00:00