Yuri Victorovich 9e9b750538 science/py-ase: Update 3.17.0 -> 3.18.0		2019-07-20 23:20:19 +00:00
..
2d-rewriter
abinit	science/abinit: Fix libomp.so in LDFLAGS (this also might fix the breakage on 13)	2019-05-19 03:01:48 +00:00
afni	science/afni: Upgrade to 19.1.20	2019-06-18 19:00:55 +00:00
agrum	science/agrum: Update 0.15.0 -> 0.15.2	2019-07-20 20:56:16 +00:00
aircraft-datcom
ALPSCore
antioch
apbs
atom
atompaw	science/atompaw: Update 4.1.0.5 -> 4.1.0.6	2019-06-28 04:52:35 +00:00
avogadro2
avogadrolibs	science/avogadrolibs: Update 1.92.0 -> 1.92.1	2019-05-11 18:10:31 +00:00
bagel
bddsolve
berkeleygw
bodr
brian
buddy
cdcl
cdf
cdo	Cosmetic change	2019-06-27 20:03:54 +00:00
cgnslib
cgribex
checkmol
chemical-mime-data
chemps2
chemtool
chemtool-devel
chrono	science/chrono: Broken on i386	2019-05-18 22:28:29 +00:00
clhep
clipper	science/clipper: add USES=compiler:c++11-lang	2019-05-11 20:30:19 +00:00
code_saturne	Switch to Python 3.6 and upgrade to v5.3.3.	2019-05-19 19:22:45 +00:00
colt
coordgenlibs
coot	Clean up LIB_DEPENDS	2019-06-16 16:05:28 +00:00
cp2k
cp2k-data
crf++
dalton
datawarrior
dcl
devisor
dftbplus	science/dftbplus: Unbreak build with GCC 9	2019-07-03 10:05:47 +00:00
dkh
dlib-cpp
dlpoly-classic
drawxtl
dvc
eccodes	Update to 2.13.0	2019-07-19 17:02:43 +00:00
elk
epte
erd
erkale	- Update math/armadillo to 9.600.4	2019-07-17 20:00:42 +00:00
erkale-pseudopotentials
esys-particle	science/esys-particle: Broken on 13-CURRENT	2019-05-18 22:58:19 +00:00
fastcap
fasthenry
fisicalab
fleur
fsom
fvcom
fvcom-mpi
gabedit	Add compiler:c++11-lang to USES to fix the following on GCC-based systems:	2019-06-17 11:39:30 +00:00
gamess-us
gchemutils
gdma
getdp	- Update to 3.2.0.	2019-07-03 23:55:47 +00:00
ghemical
ghmm
gnudatalanguage	Update graphics/libgeotiff to 1.5.1	2019-06-27 19:57:33 +00:00
gpaw-setups
gramps
grib_api
gromacs	science/gromacs: Update 2019.2 -> 2019.3	2019-06-15 19:35:27 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
h5z-zfp	science/h5z-zfp: Update 0.9.0 -> 1.0.1	2019-06-30 08:34:58 +00:00
harminv	Update Guile to version 2.2.5, modern stable version, and fix dependent	2019-06-27 09:02:56 +00:00
hdf
hdf5
hdf5-18
healpix
hypre	science/hypre: Update 2.15.1 -> 2.16.0	2019-05-13 07:57:57 +00:00
iboview
InsightToolkit	- Update devel/gdcm to 3.0.0.	2019-06-01 21:59:13 +00:00
isaac-cfd
jdftx
jmol	science/jmol: Update 14.29.42 -> 14.29.46	2019-06-07 05:59:51 +00:00
jstrack	science/jstrack: remove meaningless 85+ from USES tk	2019-06-12 16:16:10 +00:00
kalzium	science/kalzium: fix build on GCC architectures	2019-07-19 09:35:46 +00:00
kim-api	New port: science/kim-api: Framework for reliable, reproducible, portable molecular simulations	2019-07-19 17:51:08 +00:00
kst2
lammps	Clean up LIB_DEPENDS	2019-06-16 16:05:28 +00:00
lamprop
latte	devel/openmp: phase out	2019-05-08 16:05:53 +00:00
libaec
libccp4
libcint
libctl	Update Guile to version 2.2.5, modern stable version, and fix dependent	2019-06-27 09:02:56 +00:00
libefp
libgeodecomp
libghemical
libgridxc
libint
libint2
libkml
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc	New port: science/libvdwxc: Van der Waals density functional (DFT) library	2019-05-18 05:40:31 +00:00
libxc
liggghts	Clean up LIB_DEPENDS	2019-06-16 16:05:28 +00:00
lm	Update devel/protobuf to 3.8.0	2019-07-05 19:08:49 +00:00
luscus	science/luscus: fix build with GCC-based architectures	2019-05-09 19:59:20 +00:00
madness
maeparser
massxpert	science/massxpert: prepare for Qt 5.13	2019-07-13 12:50:04 +00:00
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
meep	Update Guile to version 2.2.5, modern stable version, and fix dependent	2019-06-27 09:02:56 +00:00
metaf2xml
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif	Convert all Go ports to USES=go	2019-06-29 03:51:13 +00:00
molscript	Clean up LIB_DEPENDS	2019-06-16 16:05:28 +00:00
molsketch
mpb	Update Guile to version 2.2.5, modern stable version, and fix dependent	2019-06-27 09:02:56 +00:00
mpqc
msms
multiwfn
namd
ncnn	science/ncnn: Fix grammar and spelling in pkg-descr	2019-07-20 22:13:56 +00:00
nest	science/nest: Update 2.16.0 -> 2.18.0	2019-06-28 09:10:18 +00:00
netcdf
netcdf-cxx
netcdf-fortran
nifticlib	science/nifticlib: fix build	2019-06-08 19:24:18 +00:00
nwchem	science/nwchem: Update 6.8.1.20190509 -> 6.8.1.20190606	2019-06-08 07:54:52 +00:00
nwchem-data
octopus	Clean up LIB_DEPENDS	2019-06-16 16:05:28 +00:00
openbabel	Prepare for powerpc-on-clang by deleting hard-coded tests for libstdc++.so	2019-07-12 02:25:07 +00:00
openkim	Simplify architecture tests for 64-bit. Listing each ARCH is fragile; e.g.,	2019-07-12 15:41:37 +00:00
openmx	Chase devel/openmp expiration	2019-05-27 20:55:56 +00:00
opensim-core
opensph	New port: science/opensph: Library and graphical tools for running SPH and N-body simulations	2019-05-26 04:08:09 +00:00
opsin	science/opsin: Update 3.0.20190208 -> 3.0.20190223	2019-05-11 06:00:09 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS	Update to 0.113	2019-06-22 21:50:07 +00:00
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
pagmo2
paje
paraview	science/paraview: fix build on GCC architectures	2019-07-19 20:34:28 +00:00
pcmsolver
PETSc	science/PETSc: fix typo	2019-07-01 19:52:04 +00:00
pnetcdf
psychopy
pulseview
py-abipy
py-asdf
py-ase	science/py-ase: Update 3.17.0 -> 3.18.0	2019-07-20 23:20:19 +00:00
py-avogadrolibs
py-cdo	Update to 1.5.3	2019-06-25 20:52:05 +00:00
py-chempy
py-coards
py-DendroPy
py-dlib
py-eccodes-python	Update to 0.9.2	2019-07-10 17:00:42 +00:00
py-geometer
py-gpaw	science/py-gpaw: Update 1.5.1 -> 1.5.2	2019-05-09 20:12:51 +00:00
py-GPy	science/py-GPy: Fix build by explicitly setting the path to libomp.so in xx_DEPENDS lines	2019-05-23 21:21:49 +00:00
py-GPyOpt
py-gsd
py-h5py
py-hcluster
py-kinematics
py-lifelines
py-MDAnalysis	science/py-MDAnalysis: fix build	2019-06-29 10:28:48 +00:00
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4	Cleanup cython dependency.	2019-05-11 21:10:31 +00:00
py-obspy
py-oddt
py-OpenFermion
py-openpiv
py-paida
py-paramz	science/py-paramz: Update 0.9.4 -> 0.9.5	2019-05-18 15:56:47 +00:00
py-phono3py	Chase devel/openmp expiration	2019-05-27 20:55:56 +00:00
py-phonopy	science/py-phonopy: Update 2.1.3 -> 2.1.4	2019-06-28 05:04:05 +00:00
py-pupynere
py-pyaixi
py-pydicom
py-PyFR	Chase devel/openmp expiration	2019-05-27 20:55:56 +00:00
py-pygeodesy
py-pymatgen	science/py-pymatgen: Update 2019.1.24 -> 2019.2.28	2019-05-08 05:49:01 +00:00
py-pymol
py-pyosf
py-PyQuante
py-pysal
py-pyteomics	Update to 4.1.2	2019-06-09 16:52:36 +00:00
py-pyteomics.biolccc
py-qcelemental	science/py-qcelemental: Update 0.4.1 -> 0.4.2	2019-06-19 08:14:24 +00:00
py-qcengine	science/py-qcengine: Update 0.6.4 -> 0.7.1	2019-06-19 08:15:53 +00:00
py-qspin
py-quantities
py-rmf
py-rmsd	science/py-rmsd: Fix license	2019-05-26 18:17:15 +00:00
py-ruffus	New port: science/py-ruffus	2019-07-11 16:50:44 +00:00
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn	- Update to 0.20.3	2019-05-14 02:17:08 +00:00
py-scikit-sparse
py-scimath
py-scipy	Update to 1.2.2	2019-07-07 19:14:54 +00:00
py-scoria
py-SimpleSpectral
py-spglib	science/py-spglib: Update 1.12.2 -> 1.13.0	2019-07-06 03:01:12 +00:00
py-veusz	science/py-veusz: fix build on GCC architectures	2019-07-18 11:26:50 +00:00
py-ws2300
pybrain
pycdf
pynn
qbox	science/qbox: Update 1.67.2 -> 1.67.4	2019-06-20 22:06:56 +00:00
qcl
qmcpack	devel/openmp: phase out	2019-05-08 16:05:53 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk	- Update to 2.2-8	2019-07-07 12:32:58 +00:00
R-cran-DCluster
R-cran-e1071	- Update to 1.7-2	2019-07-07 12:51:23 +00:00
R-cran-eco
R-cran-Epi	- Update to 2.37	2019-07-07 12:34:59 +00:00
R-cran-epicalc
R-cran-etm	- Update to 1.0.5	2019-07-07 13:57:22 +00:00
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody
simgrid	New port: science/simgrid: Simulator of the behavior of large-scale distributed systems	2019-05-16 16:00:15 +00:00
simint
simlib
simsmith
smoldyn	New port: science/smoldyn: Biochemical simulator for molecular diffusion, surface interactions	2019-06-09 03:26:15 +00:00
sparta
spglib
step	KDE Applications: update to 19.04.3	2019-07-12 05:32:09 +00:00
svmlight
szip
teem	Clean up LIB_DEPENDS	2019-06-16 16:05:28 +00:00
tfel
tinker	science/tinker: Update 8.6.1 -> 8.7.1	2019-07-14 00:34:53 +00:00
udunits
v_sim
vipster
vmd
voro++
wannier90
wwplot	New port: science/wwplot: Plotting tool for experimental physics classes	2019-07-20 16:51:13 +00:00
wxmacmolplt	science/wxmacmolplt: fix build with GCC-based architectures	2019-05-20 20:09:32 +00:00
xcrysden
xdrawchem
xfce4-equake-plugin	- Simplify XFCE MASTER_SITES usage	2019-06-19 16:14:27 +00:00
xmakemol
yoda
Makefile	New port: science/ncnn: High-performance neural network inference framework	2019-07-20 21:57:30 +00:00