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freebsd-ports/science
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TAKATSU Tomonari 8d1ac42ef1 - Update to 5.4.4 
- Enable gtk by default
- Make use of PORTDOCS and PORTEXAMPLES

PR: ports/165350 (based on)
Submitted by: Shin-ya Murakami (maintainer)
2012-02-21 16:24:19 +00:00
..
2d-rewriter
2dhf adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
abinit adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
afni The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
avogadro - Fix paths in installed CMake modules. 2011-09-06 23:30:43 +00:00
bddsolve Mark as broken on powerpc. 2011-12-28 06:55:26 +00:00
bft - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
bodr
brian - Update to 1.3.1 2011-12-31 08:04:46 +00:00
buddy Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
cdcl
cdf Mark broken on powerpc as well as sparc64. (In fact, on all the tier-2s.) 2011-11-10 05:38:32 +00:00
cdo - Update to 1.5.3 2011-11-01 15:08:47 +00:00
cgnslib
checkmol
chemical-mime-data - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
chemtool - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
chemtool-devel
clhep
colt
crf++
dcl - Update to 5.4.4 2012-02-21 16:24:19 +00:00
devisor
dtiquery
ecs
elmer-eio
elmer-hutiter adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
elmer-matc
elmer-meshgen2d
elmergrid
elmerpost Mark as broken on recent i386-9: does not compile. 2011-08-29 04:10:04 +00:00
epte
euler
fastcap
fasthenry The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
felt
flounder - Unbreak - fix build with latest x11-toolkits/fltk 2011-11-17 10:41:36 +00:00
fvm
g3data
gamess adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
gchemutils Update to 0.12.10. 2011-11-22 14:49:25 +00:00
gdis
getdp
ghemical - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
ghmm
gnudatalanguage - Chase plplot shlib bump 2011-11-22 16:09:16 +00:00
gramps
gromacs - update fftw3* to 3.3 [1], and adjust dependent ports 2011-10-17 10:08:33 +00:00
gsmc Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
gsystem Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
gtamsanalyzer
gwyddion - update fftw3* to 3.3 [1], and adjust dependent ports 2011-10-17 10:08:33 +00:00
h5utils
harminv - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
hdf
hdf5
hdf5-18 Update to 1.8.8 2012-02-13 03:31:53 +00:00
hdf-java -Update to 2.8 2012-02-13 05:12:38 +00:00
hs-bio - Update to 0.5.1 2012-02-13 05:20:41 +00:00
ics
InsightToolkit
isaac-cfd
jmol
jstrack
kalzium - Bump PORTREVISION to chase the update of multimedia/libvpx 2012-02-16 15:57:34 +00:00
kmovisto
kst
kst2 Add patch from upstream to fix build on i386 2011-10-31 14:06:05 +00:00
lamprop
libctl Remove a special configuration for versions of FreeBSD before 7.0 2011-09-18 20:01:12 +00:00
libghemical Use libdata/pkgconfig instead of lib/pkgconfig, 2011-08-25 02:01:42 +00:00
libint - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
libkml - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
liblinear
liboglappth - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
libquantum
libsvm The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
libsvm-python The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
linsmith - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
massxpert Remove CMAKE_USE_PTHREAD from the ports using it. 2011-11-14 03:26:46 +00:00
mayavi
mbdyn adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
mcstas Change maintainer address to my FreeBSD address 2011-09-15 12:33:27 +00:00
medit
meep - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
minc - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
minc2 - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
mol2ps
mpb adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
mpqc adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
mpqc-mpich Fix the two affected ports 2012-02-10 09:33:05 +00:00
ncs adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
netcdf - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
netcdf3-ftn
netcdf4 - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
netcdf-ftn
nifticlib
omnetpp Remove optional dependency on graphics/giftrans, which is about to be removed 2011-10-09 01:39:20 +00:00
openbabel - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
ovt . Update to 2.3_4. 2012-02-07 04:00:04 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR - Update to 1.21 2012-02-08 07:25:19 +00:00
p5-Geo-Coordinates-Converter At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS - Update to 0.010 2012-01-07 17:37:32 +00:00
p5-PerlMol
p5-Physics-Unit
paje - fix build with gcc46 2012-01-14 09:14:53 +00:00
paraview
peekabot - Mark BROKEN: does not compile 2011-10-31 22:54:04 +00:00
pnetcdf
psi3 adjust linking and comments in dependent ports after the math/atlas update; 2011-11-22 11:14:10 +00:00
psychopy At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-biolccc
py-DendroPy Update to 3.10.1 2012-01-31 23:23:38 +00:00
py-h5py
py-hcluster At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-mdp
py-mlpy At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-netCDF4 - Update to 0.9.8 2011-10-26 02:07:42 +00:00
py-obspy-core - Update to 0.6.2 2012-02-09 00:12:41 +00:00
py-obspy.db - update to 0.5.1 2012-01-11 05:41:26 +00:00
py-obspy.gse2 - update to 0.5.1 2012-01-11 05:41:26 +00:00
py-obspy.imaging - update to 0.5.1 2012-01-11 05:41:26 +00:00
py-obspy.iris - update to 0.5.1 2012-01-11 05:52:18 +00:00
py-obspy.mseed - Updat to 0.5.0 2011-12-09 08:16:47 +00:00
py-obspy.signal - Update to 0.5.0 2011-12-13 03:13:41 +00:00
py-obspy.taup The obspy.taup package contains Python wrappers for iaspei-tau - a travel 2012-01-16 06:55:05 +00:00
py-obspy.wav - Update to 0.5.0 2011-12-09 08:26:04 +00:00
py-obspy.xseed - Update to 0.5.0 2011-12-09 08:26:04 +00:00
py-openbabel
py-paida
py-pydicom
py-scimath At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
py-scipy - Update to 0.10.0 2011-12-09 08:05:48 +00:00
py-ws2300
pybrain
pycdf At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
pynn - Update to 0.7.2 2011-11-03 12:59:20 +00:00
qcl Remove more tags from pkg-descr files fo the form: 2011-10-24 04:17:37 +00:00
qtresistors
R-cran-AMORE update math/R to 2.14.1, and adjust dependent ports 2012-01-18 23:04:08 +00:00
R-cran-bayesm update math/R to 2.14.1, and adjust dependent ports 2012-01-18 23:04:08 +00:00
R-cran-DCluster update math/R to 2.14.1, and adjust dependent ports 2012-01-18 23:04:08 +00:00
R-cran-e1071 - Add a new port: science/R-cran-e1071 2012-02-11 02:26:29 +00:00
R-cran-eco update math/R to 2.14.1, and adjust dependent ports 2012-01-18 23:04:08 +00:00
R-cran-Epi - Update to 1.1.33 2012-01-26 11:34:06 +00:00
R-cran-epicalc - Update to 2.14.1.6 2012-02-20 08:52:38 +00:00
R-cran-snow - Add a new port: science/R-cran-snow 2012-01-31 13:14:19 +00:00
ruby-dcl - Update to 1.6.3 2012-02-17 22:22:43 +00:00
ruby-gphys
ruby-netcdf The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
rubygem-ai4r
silo - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
simlib
step - Bump PORTREVISION to chase the update of multimedia/libvpx 2012-02-16 15:57:34 +00:00
svmlight
szip - Update distinfo because distfile was rerolled upstream [1] 2012-02-04 07:44:50 +00:00
udunits - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
v_sim - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
veusz
vis5d+ - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
vmd re-assignment of echo_msg breaks 'make readme' 2011-12-20 19:33:30 +00:00
x11iraf
xmakemol
xmds The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
Makefile - Add a new port: science/R-cran-e1071 2012-02-11 02:26:29 +00:00