freebsd-ports/biology
Martin Wilke fd3d7b435b - Respect CC
PR:		163172
Submitted by:	Jan Beich <jbeich@tormail.net>
Approved by:	maintainer timeout
2012-01-27 17:41:00 +00:00
..
adun
ariadne
artemis Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
avida Change maintainer address to my FreeBSD address 2011-09-15 12:33:27 +00:00
babel
belvu
biococoa
biojava
blast
blat
boinc-simap - Fix fetch and update WWW 2011-11-04 20:39:12 +00:00
chemeq Remove WWW entries from unmaintained ports that return 404 or where the domain 2011-08-02 20:58:23 +00:00
clustalw Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since 2011-08-11 19:20:17 +00:00
consed
crux Does not build on powerpc-9: error in pthreads. 2011-11-10 14:30:51 +00:00
dna-qc
dotter
embassy - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
emboss - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
fasta
fasta3 - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
fastdnaml - Fix MASTER_SITES and WWW: line 2011-08-26 00:24:48 +00:00
finchtv
fluctuate
garlic
genpak
gff2ps
gmap
gperiodic
grappa
hmmer
iolib - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
jalview Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 2011-07-21 05:03:02 +00:00
lagan
lamarc - The proper acronym for Apache Software License 2 is really AL2 2012-01-09 15:41:08 +00:00
libgenome
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
mopac - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
mrbayes
mummer - Update to 3.23 2012-01-17 00:51:39 +00:00
muscle
ncbi-toolkit - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
njplot
ortep3
p5-AcePerl - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
p5-Bio-ASN1-EntrezGene - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
p5-Bio-Das - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
p5-Bio-Das-Lite - Fix missing DEPENDS to silence build warnings 2011-09-24 20:45:23 +00:00
p5-Bio-GFF3 - Update to 0.7 2011-10-10 02:33:51 +00:00
p5-Bio-Glite At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Bio-Graphics - Fix LICENSE (Artistic 1 instead of Artistic 2) 2011-10-07 11:22:46 +00:00
p5-Bio-MAGETAB - Update to 1.21 2011-11-23 17:40:48 +00:00
p5-Bio-NEXUS At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-Bio-Phylo - Update to 0.45 2011-10-29 06:20:45 +00:00
p5-Bio-SCF At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-bioperl At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
p5-bioperl-run At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 2012-01-21 17:40:15 +00:00
paml
phd2fasta
phrap
phred
phylip
phyml
platon The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
povchem
primer3 - Respect CC 2012-01-27 17:41:00 +00:00
protomol - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
psi88
py-biopython - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
pycogent - Update to 1.5.1 2011-08-11 11:37:18 +00:00
pyfasta - Update to 0.44 2011-10-13 06:27:34 +00:00
pymol
python-nexus - Update to 0.87 2011-12-23 08:05:00 +00:00
rasmol
recombine
ruby-bio
seaview Chase pdflib.so version and bump PORTREVISION accordingly. 2012-01-10 11:41:37 +00:00
seqio
sim4
ssaha
t_coffee - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
tinker - ${FFLAGS} might contain commas 2011-10-10 20:17:22 +00:00
treepuzzle
treeviewx - remove maintainer tags from pkg-descr 2011-10-22 23:50:23 +00:00
tRNAscan-SE
velvet
wise
xdrawchem - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 2011-09-23 22:26:39 +00:00
xmolwt The vast majority of pkg-descr files had the following format when they 2011-10-24 09:11:38 +00:00
Makefile Bye bye abandonwares (part 2) 2011-08-01 04:29:44 +00:00