freebsd-ports/science
Tobias C. Berner b1c9d40132 MFH: r551930
KDE Release Service 20.08.2 update

Dozens of KDE apps are getting new releases from KDE’s release service. New
features, usability improvements, re-designs and bug fixes all contribute to
helping boost your productivity and making this new batch of applications more
efficient and pleasant to use.

Approved by:	ports-secteam (joneum)
2020-10-15 18:14:25 +00:00
..
2d-rewriter
abinit Mark BROKEN: fails to build 2020-05-29 08:38:54 +00:00
afni science/afni: update to 20.2.19 2020-09-30 11:11:44 +00:00
agrum science/agrum: Update 0.18.0 -> 0.18.1 2020-07-20 19:12:02 +00:00
aircraft-datcom science/aircraft-datcom: Unbreak build with GCC 10 2020-07-04 11:07:57 +00:00
ALPSCore
antioch
apbs science/apbs: fix build on current 2020-08-27 18:37:59 +00:00
atompaw
avogadro2
avogadrolibs
bagel Chase ScaLAPACK´s upgrade and resolve conflict between cblas and openblas. 2020-06-14 09:14:03 +00:00
bddsolve
berkeleygw science/berkeleygw: Unbreak build with GCC 10 2020-06-25 06:50:17 +00:00
bodr
buddy
cdcl science/cdcl: fix build on recent current 2020-08-28 16:09:15 +00:00
cdf science/cdf: Unbreak build with GCC 10 2020-07-04 10:40:42 +00:00
cdk
cdo Remove ACCEPT_USE_OF_DEPRECATED_PROJ_API_H 2020-05-16 10:51:44 +00:00
cgnslib Upgrade to v4.1.2 and add a test target. 2020-09-13 09:26:10 +00:00
cgribex Update to 1.9.4 2020-05-16 10:51:49 +00:00
checkmol
chemical-mime-data
chemps2 Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
chemtool science/chemtool: Fix build on 13 by adding -fcommon 2020-09-20 23:32:51 +00:00
chemtool-devel
chrono
clhep
clipper
code_saturne Upgrade to v6.1.2 (6.2.0 is still an intermediate release). 2020-09-13 19:31:29 +00:00
colt
coordgenlibs science/coordgenlibs: Update 1.4.0-6 -> 1.4.1 2020-06-29 00:46:52 +00:00
cp2k Re-add port: science/cp2k: Quantum chemistry and solid state physics software package; Update 6.1.0 -> 7.1.0-20200518 2020-05-20 02:27:15 +00:00
cp2k-data science/cp2k-data: Update 6.1.0 -> 7.1.0 2020-05-25 04:00:02 +00:00
crf++ Clean up some things 2020-09-24 08:50:25 +00:00
dalton Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
datawarrior Deprecate ports broken for more than 6 months 2020-07-26 07:32:00 +00:00
dcl science/dcl: Unbreak build with GCC 10 2020-07-04 06:54:39 +00:00
devisor
dftbplus science/dftbplus: Change to python3. 2020-05-20 00:36:40 +00:00
dkh
dlib-cpp science/dlib-cpp and science/py-dlib: Update to 19.21. 2020-08-20 09:50:18 +00:00
dlpoly-classic
drawxtl
dvc Fix build post-r547793. 2020-09-09 15:24:00 +00:00
eccodes Use local patch file instead of PATCHFILES 2020-09-19 15:35:11 +00:00
elk science/elk: Update 5.2.14 -> 6.8.4 2020-06-30 15:12:48 +00:00
elmerfem science/elmerfem: Update to 8.4.20200708 and fix dependencies 2020-07-31 09:49:03 +00:00
epte science/epte: fix build on recent current 2020-08-28 20:59:08 +00:00
erd
ergo Some days it does not pay to get out of bed. 2020-05-15 04:25:56 +00:00
erkale - Update math/armadillo to 9.900.2 2020-08-10 13:12:01 +00:00
erkale-pseudopotentials science/erkale-pseudopotentials: Update g20190114 -> g20200426 2020-05-07 00:32:03 +00:00
fastcap science/fastcap: fix build on recent current 2020-08-28 22:00:33 +00:00
fasthenry science/fasthenry: fix build on recent current 2020-08-28 22:02:42 +00:00
fastjet science/fastjet: Enable plugins; Fix the config program 2020-05-26 17:10:15 +00:00
fisicalab
fsom
fvcom
fvcom-mpi
gabedit science/gabedit: Update 2.5.1-061218 -> 2.5.1-300720; Fix build on 13 2020-09-20 22:12:22 +00:00
gamess-us Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
gchemutils
gdma
getdp
ghemical science/ghemical: Not compatible with the upcoming OpenBabel-3 => disable this internal option 2020-05-10 21:40:08 +00:00
ghmm
gnudatalanguage Unbreak bulk -a 2020-09-19 14:15:42 +00:00
gpaw-setups
gramps
grib_api
gromacs science/gromacs: Update 2020.2 -> 2020.3 2020-07-16 06:32:45 +00:00
gsmc
gtamsanalyzer
h5utils
h5z-zfp
harminv
hdf science/hdf: update to 4.2.15 to fix build on powerpc64 2020-08-22 20:43:44 +00:00
hdf5
hdf5-18
healpix
hepmc3 science/hepmc3: Update science/hepmc3: Update 3.2.1 -> 3.2.2 2020-06-15 04:02:53 +00:00
highfive science/highfive: Update 2.2.1 -> 2.2.2 2020-08-03 03:29:56 +00:00
hypre science/hypre: Update 2.19.0 -> 2.20.0 2020-09-25 19:01:00 +00:00
iboview Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
InsightToolkit - Update devel/gdcm to 3.0.7. 2020-07-04 20:53:55 +00:00
isaac-cfd science/isaac-cfd: Unbreak build with GCC 10 2020-07-04 08:00:41 +00:00
jdftx science/jdftx: Update 1.5.0 -> 1.6.0 2020-06-15 20:29:51 +00:00
jmol science/jmol: Update 14.31.7 -> 14.31.8 2020-09-29 08:25:14 +00:00
jstrack
kalzium MFH: r551930 2020-10-15 18:14:25 +00:00
kim-api
kst2 Force to rebuild after math/matio update 2020-09-26 16:30:14 +00:00
lammps science/lammps: Update 24Aug2020 -> 18Sep2020 2020-09-19 03:35:55 +00:00
lamprop
latte science/latte: Update 1.2.1 -> 1.2.2 2020-05-07 01:02:37 +00:00
libaec
libccp4 science/libccp4: Unbreak build with GCC 10 2020-07-04 11:10:29 +00:00
libcint science/libcint: Update 3.0.20 -> 3.1.1 2020-08-27 05:37:22 +00:00
libctl
libefp
libgeodecomp - Fix build 2020-09-20 07:35:09 +00:00
libghemical
libgridxc MFH: r552183 2020-10-13 08:13:39 +00:00
libint
libint2
libkml Convert REINPLACE_CMD to patch files 2020-05-08 20:50:41 +00:00
liblinear Update to 2.41 2020-08-27 18:43:36 +00:00
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
luscus science/luscus: Fix build on 13 2020-09-21 16:24:03 +00:00
madness Update devel/tbb to 2020.3 and bump dependent ports' revisions 2020-07-17 10:12:25 +00:00
maeparser
massxpert Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
mbdyn Mark as BROKEN on powerpc64: 2020-05-18 01:38:12 +00:00
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb Change the maintainer entry in rhurlin's ports 2020-09-10 19:17:38 +00:00
mpqc
msms
multiwfn Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
namd
nest
netcdf
netcdf-cxx
netcdf-fortran science/netcdf-fortran: Unbreak build with GCC 10 2020-07-26 17:58:54 +00:00
nifticlib
nwchem science/nwchem: Update to 7.0.0-release 2020-05-07 07:58:36 +00:00
nwchem-data science/nwchem-data: Update 6.8.1.20190125 -> 7.0.0 2020-05-07 02:54:17 +00:00
octopus Mark BROKEN 2020-05-16 10:03:40 +00:00
openbabel
openkim
openkim-models
opensim-core Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
opensph science/opensph: Use USE_WX instead of the LIB_DEPENDS with the WX library 2020-09-01 20:00:46 +00:00
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR Update to 1.38 2020-07-24 07:10:54 +00:00
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 science/pagmo2: Update 2.15.0-95 -> 2.15.0-102 2020-09-19 19:52:53 +00:00
paje
pcmsolver
PETSc
plumed science/plumed: Update 2.6.0 -> 2.6.1 2020-07-16 19:51:30 +00:00
pnetcdf
pulseview science/pulseview: prepare for Qt5-5.15 2020-05-30 10:09:51 +00:00
py-abipy math/py-seaborn: Update to 0.10.1 2020-05-31 21:03:37 +00:00
py-asdf Update to 2.7.1 2020-08-21 21:24:31 +00:00
py-ase science/py-ase: Update 3.20.0 -> 3.20.1 2020-09-05 06:05:19 +00:00
py-avogadrolibs
py-cdo
py-chainer Bump PORTREVISION for devel/protobuf shlib change 2020-08-30 20:19:41 +00:00
py-chainer-chemistry science/py-chainer-chemistry: Update 0.7.0 -> 0.7.1 2020-08-17 20:05:58 +00:00
py-chempy science/py-chempy: Update 0.7.11 -> 0.7.12 2020-07-06 17:14:00 +00:00
py-coards
py-DendroPy
py-dlib science/py-dlib: Fix plist. 2020-08-29 18:15:01 +00:00
py-eccodes-python
py-geolinks
py-geomet
py-geometer Update to 0.2.3 2020-07-09 18:09:16 +00:00
py-geometric Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-gpaw Mark BROKEN 2020-05-17 18:33:45 +00:00
py-GPy
py-GPyOpt
py-gsd science/py-gsd: Update 2.1.2 -> 2.2.0 2020-09-06 14:40:22 +00:00
py-h5json
py-h5py
py-kim-query science/py-kim-query: Update 1.0.0 -> 1.1.0 2020-08-28 19:44:09 +00:00
py-kinematics
py-kliff Unbreak bulk -a 2020-07-14 07:59:28 +00:00
py-liac-arff Update to 2.5.0 2020-09-05 10:10:15 +00:00
py-lifelines Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-MDAnalysis Unbreak bulk -a 2020-06-13 15:05:44 +00:00
py-MDAnalysisTests Unbreak bulk -a 2020-06-13 15:05:44 +00:00
py-mdp science/py-mdp: remove optional expired dependency on devel/py-pp 2020-08-15 11:19:52 +00:00
py-mmtf-python
py-molmod science/py-molmod: Update 1.4.7 -> 1.4.8 2020-06-26 01:57:29 +00:00
py-moltemplate science/py-moltemplate: Update 2.18.3 -> 2.18.6 2020-09-29 08:19:32 +00:00
py-netCDF4
py-obspy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-oddt
py-OpenFermion Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-openpiv science/py-openpiv: update to 0.22.3 2020-09-28 21:18:16 +00:00
py-paida
py-paramz
py-phono3py Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-phonopy science/py-phonopy: Update 2.7.1 -> 2.8.0 2020-09-24 01:03:56 +00:00
py-pupynere
py-pyaixi
py-pycsw
py-pydicom
py-PyFR science/py-PyFR: Update 1.9.0 -> 1.10.0 2020-05-29 05:48:10 +00:00
py-pygeodesy
py-pygeometa
py-pygmo2 science/py-pygmo2: Update 2.15.0-121 -> 2.15.0-139 2020-09-19 19:55:21 +00:00
py-pymatgen - Update WWW 2020-05-26 09:32:48 +00:00
py-pymol pymol fails to build with python 2.7 2020-05-29 08:42:46 +00:00
py-pyosf
py-pysal
py-pyteomics Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-qcelemental science/py-qcelemental: Update 0.12.0 -> 0.16.0 2020-09-13 19:43:38 +00:00
py-qcengine science/py-qcengine: Update 0.10.0 -> 0.16.0 2020-09-13 19:47:28 +00:00
py-qspin
py-quantities
py-rmf Move devel/swig30 to devel/swig and update to 4.0.1 2020-06-17 18:17:45 +00:00
py-rmsd
py-ruffus
py-scikit-fuzzy Unbreak bulk -a 2020-09-19 14:15:42 +00:00
py-scikit-learn - Update WWW 2020-06-17 09:35:01 +00:00
py-scikit-optimize Update to 0.8.1 2020-09-06 15:37:09 +00:00
py-scikit-sparse
py-scimath - Update to 4.2.0 2020-09-25 03:11:49 +00:00
py-scipy science/py-scipy: Unbreak build with GCC 10 2020-07-05 11:02:17 +00:00
py-scoria
py-SimpleSpectral
py-spglib science/py-spglib: Update 1.15.1 -> 1.16.0 2020-08-03 07:26:39 +00:00
py-tensorflow Bump PORTREVISION for devel/protobuf shlib change 2020-08-30 20:19:41 +00:00
py-veusz
pybrain Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 4). 2020-05-27 15:31:55 +00:00
pynn
qbox science/qbox: Update 1.71.5 -> 1.72.0 2020-09-25 19:01:45 +00:00
qcl
qiskit-aer devel/libfmt: Update to 7.0.3 2020-09-07 21:19:41 +00:00
qmcpack Bump 46 ports depending on math/openblas because the after the recent math/openblas update the library name changed in openblas. 2020-05-06 16:11:14 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk - Update to 2.2-10 2020-06-14 12:16:54 +00:00
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi - Update to 2.41 2020-08-10 08:08:06 +00:00
R-cran-epicalc
R-cran-etm - Update to 1.1.1 2020-09-09 08:59:47 +00:00
R-cran-FAdist
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit
rmf
rubygem-ai4r
rubygem-cdo Update to 1.5.1 2020-05-16 11:04:45 +00:00
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile Update to 3.0.0 2020-09-05 21:35:09 +00:00
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis science/scidavis: 2020-05-27 20:10:56 +00:00
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo science/silo: Backport of patches from Debian to support Python 3 2020-09-27 11:32:55 +00:00
simbody Bump 37 ports depending on math/openblas through USES=blaslapack:openblas because after the recent math/openblas update the library name changed in openblas 2020-05-06 16:39:12 +00:00
simgrid science/simgrid: add libunwind to dependencies on powerpc64 2020-09-12 19:19:49 +00:00
simint
simlib
simsmith Sanitize COMMENT per Section 5.6 of the FreeBSD Porter's Handbook (part 6). 2020-05-28 08:43:29 +00:00
smoldyn
sparta science/sparta: Update 24Jan2020 -> 6Jul2020 2020-07-13 23:41:01 +00:00
spglib science/spglib: Update 1.15.1 -> 1.16.0 2020-08-03 07:26:08 +00:00
step MFH: r551930 2020-10-15 18:14:25 +00:00
svmlight
szip
teem
tfel
tinker science/tinker: Update 8.7.2 -> 8.8.1 2020-08-17 20:37:46 +00:00
udunits
v_sim - Fix build without NLS (missing gettext-tools dependency) and without EXAMPLES (broken patching) 2020-08-04 16:00:43 +00:00
vipster devel/libfmt: Update to 7.0.3 2020-09-07 21:19:41 +00:00
vmd
voro++
votca science/votca: Update 1.6.1 -> 1.6.2 2020-08-29 18:44:12 +00:00
wannier90
wwplot
wxmacmolplt x11-toolkits/wxgtk30: Update to 3.0.5.1 2020-05-17 05:55:12 +00:00
xcrysden science/xcrysden: Fix build on 13 by adding -fcommon 2020-09-21 00:45:07 +00:00
xdrawchem
xfce4-equake-plugin
xtb science/xtb: update to 6.3.3 2020-09-20 21:19:02 +00:00
yoda science/yoda: Update 1.8.2 -> 1.8.3 2020-07-09 00:50:09 +00:00
Makefile Remove expired ports: 2020-09-19 13:01:00 +00:00