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freebsd-ports/science
History
Yuri Victorovich ed32f634e1 science/py-pymol: Update to 2.1.0 
Release notes:
https://pymol.org/dokuwiki/?id=media:new21

Port changes:
* Fixed shebang in bin/pymol
* Misc minor changes

Reported by:	portscout
2018-03-20 07:53:14 +00:00
..
2d-rewriter
afni Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
aircraft-datcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ALPSCore Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
avogadro Mark as broken on arm. 2018-03-18 06:22:04 +00:00
bddsolve Add more information to stub error messages. 2018-03-09 22:46:22 +00:00
bft
bodr
brian Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
buddy
cdcl
cdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
cdo
cgnslib Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
cgribex
checkmol
chemical-mime-data
chemps2 science/chemps2: Update to 1.8.6 2018-03-17 17:15:22 +00:00
chemtool Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
chemtool-devel Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
clhep Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
colt
crf++
dcl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
devisor
dkh Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
dlpoly-classic Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ecs Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
epte
erd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fastcap
fasthenry
fisicalab
fvcom Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvcom-mpi Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fvm Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
gchemutils
gdma Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
getdp Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ghemical Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ghmm
gnudatalanguage Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
gramps science/gramps: Tidy up the USE_PYTHON settings 2018-02-26 15:06:56 +00:00
grib_api Update to 1.26.0 2018-03-09 21:48:31 +00:00
gromacs Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
gsmc
gtamsanalyzer
gwyddion
h5utils
harminv Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
hdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
hdf5
hdf5-18
hs-bio
hypre Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
iboview Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
InsightToolkit Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
isaac-cfd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
jstrack
kalzium-kde4 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
kst2
lamprop science/lamprop: Unbreak by fixing the python interpreter in the shebang 2018-03-13 08:27:23 +00:00
libaec Convert to USE_GITLAB 2018-03-14 18:11:33 +00:00
libctl Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libefp
libgeodecomp Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libghemical Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libint Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
libkml devel/google{test,mock}: update to 1.8.0.712 2018-03-09 12:07:37 +00:00
liblinear
liboglappth Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
libquantum
libsvm
libsvm-python
libxc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
linsmith
massxpert Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mbdyn Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mcstas
mcstas-comps
mcxtrace
medit
meep science/meep: Add license; Add missing dependencies; Order USExx section 2018-03-18 06:01:25 +00:00
mei
metaf2xml
minc2
mol2ps
MOOSE-neural-simulator Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mpb Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mpqc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mpqc-mpich Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ncs science/ncs: Unbreak 2018-03-13 09:50:42 +00:00
netcdf Update to 4.6.1 2018-03-16 15:20:30 +00:00
netcdf-cxx
netcdf-fortran Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
nifticlib
openbabel
openkim Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
orthanc devel/google{test,mock}: update to 1.8.0.712 2018-03-09 12:07:37 +00:00
orthanc-dicomweb devel/google{test,mock}: update to 1.8.0.712 2018-03-09 12:07:37 +00:00
orthanc-postgresql
orthanc-webviewer devel/google{test,mock}: update to 1.8.0.712 2018-03-09 12:07:37 +00:00
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS Update to 0.107 2018-03-04 16:11:18 +00:00
p5-Mcstas-Tools Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
p5-PerlMol
p5-Physics-Unit
paje
paraview Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pcmsolver Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
PETSc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pnetcdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
psychopy Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pulseview
py-cdo
py-coards Relax USES=python 2018-02-25 05:34:03 +00:00
py-DendroPy
py-h5py Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-hcluster Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-mdp Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-mlpy Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-netCDF4 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-obspy Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-paida
py-pupynere Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-pyaixi Relax USES=python 2018-02-25 05:34:18 +00:00
py-pydicom - Update to 1.0.2 2018-03-11 01:22:55 +00:00
py-pymol science/py-pymol: Update to 2.1.0 2018-03-20 07:53:14 +00:00
py-pysal Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-pyteomics Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-pyteomics.biolccc
py-qspin Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-scikit-fuzzy Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-scikit-learn Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-scikit-sparse Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-scimath Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-scipy Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-scoria Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-tensorflow Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-veusz Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-ws2300 science/py-ws2300: Unbroke the port. 2018-02-26 04:16:14 +00:00
pybrain Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pycdf Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pynn Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
qcl
qtresistors
R-cran-AMORE Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-bayesm Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-cmprsk Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-DCluster Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-e1071 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-eco Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-Epi Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-epicalc Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-etm Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-fastICA Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-kernlab Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-snow Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-som Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
R-cran-udunits2 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-ruby-dcl
rubygem-ruby-netcdf
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo Fix order of variables 2018-03-17 14:43:34 +00:00
simlib
simsmith
siril Canonicalize dependency on libpng 2018-02-25 16:46:51 +00:00
step-kde4 math/libqalculate: Update to 2.2.1 2018-02-26 11:22:36 +00:00
svmlight
szip
tfel Update science/tfel to 3.1.1 and turn on python option by default. 2018-03-09 21:55:37 +00:00
udunits
v_sim Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
vmd Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
voro++
xfce4-equake-plugin
xmakemol
Makefile science/veusz: Unbroke; Renamed to science/py-veusz. 2018-03-01 11:29:58 +00:00