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freebsd-ports/biology
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Rene Ladan 0786acb315 Remove expired ports: 
Adjusted for ports rescued since r534032

2020-05-05 audio/festvox-czech: Broken for more than 6 months
2020-05-05 audio/gkrellmvolume2: Broken for more than 6 months
2020-05-05 audio/mixmos: Broken for more than 6 months
2020-05-05 audio/mma: Broken for more than 6 months
2020-05-05 audio/pd-cyclone: Broken for more than 6 months
2020-05-05 audio/shorten: Broken for more than 6 months
2020-05-05 audio/taglib-sharp: Broken for more than 6 months
2020-05-05 audio/xhippo: Broken for more than 6 months
2020-05-05 biology/consed: Broken for more than 6 months
2020-05-05 biology/plinkseq: Broken for more than 6 months
2020-05-05 biology/seqtools: Broken for more than 6 months
2020-05-05 biology/t_coffee: Broken for more than 6 months
2020-05-05 biology/ugene: Broken for more than 6 months
2020-05-05 comms/ath3k-firmware: Broken for more than 6 months
2020-05-05 comms/geoid: Broken for more than 6 months
2020-05-05 comms/jerm: Broken for more than 6 months
2020-05-05 comms/yaac: Broken for more than 6 months
2020-05-05 converters/dumpasn1: Broken for more than 6 months
2020-05-05 databases/elixir-exredis: Broken for more than 6 months
2020-05-05 databases/hamsterdb: Broken for more than 6 months
2020-05-05 databases/memcacheq: Broken for more than 6 months
2020-05-05 databases/mysql++1: Broken for more than 6 months
2020-05-05 databases/mysql++3: Broken for more than 6 months
2020-05-05 databases/mysql2odbc: Broken for more than 6 months
2020-05-05 databases/mysqlidxchk: Broken for more than 6 months
2020-05-05 databases/p5-DBIx-Ease: Broken for more than 6 months
2020-05-05 databases/p5-DMOZ-ParseRDF: Broken for more than 6 months
2020-05-05 databases/pear-DoctrineORM: Broken for more than 6 months
2020-05-05 databases/pear-MDB2_Driver_mysql: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DBQuery: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DBTable: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_DataObject: Broken for more than 6 months
2020-05-05 databases/pear-Structures_DataGrid_DataSource_MDB2: Broken for more than 6 months
2020-05-05 databases/pgagent: Broken for more than 6 months
2020-05-05 databases/useracc: Broken for more than 6 months
2020-05-05 deskutils/devd-notifier: Broken for more than 6 months
2020-05-05 deskutils/sugarcrm: Broken for more than 6 months
2020-05-05 deskutils/tine20: Broken for more than 6 months
2020-05-05 deskutils/tomboy-plugin-latex: Broken for more than 6 months
2020-05-05 deskutils/tomboy-plugin-todo: Broken for more than 6 months
2020-05-05 deskutils/wyrd: Broken for more than 6 months
2020-05-05 deskutils/xrolo: 64-bit unsupported
2020-05-05 devel/autodist: Broken for more than 6 months
2020-05-05 devel/bouml-doc: Broken for more than 6 months
2020-05-05 devel/cobf: Broken for more than 6 months
2020-05-05 devel/djgpp-crx: Broken for more than 6 months
2020-05-05 devel/elfrc: Broken for more than 6 months
2020-05-05 devel/frink: Broken for more than 6 months
2020-05-05 devel/gogland-eap: Broken for more than 6 months
2020-05-05 devel/hive: Broken for more than 6 months
2020-04-01 devel/hs-bytestring-nums: No releases since 2012
2020-05-05 devel/iz: Broken for more than 6 months
2020-05-05 devel/jfrog-cli: Broken for more than 6 months
2020-05-05 devel/libcfg: Broken for more than 6 months
2020-05-05 devel/libdispatch: Broken for more than 6 months
2020-05-05 devel/libjson++: Broken for more than 6 months
2020-05-05 devel/libmonetra: Broken for more than 6 months
2020-05-05 devel/libol: Broken for more than 6 months
2020-05-05 devel/libserver: Broken for more than 6 months
2020-05-05 devel/lua-MessagePack: Broken for more than 6 months
2020-05-05 devel/mercurialeclipse: Broken for more than 6 months
2020-05-05 devel/mime: Broken for more than 6 months
2020-05-05 devel/motor: Broken for more than 6 months
2020-05-05 devel/mq4cpp: Broken for more than 6 months
2020-05-05 devel/myrepos: Broken for more than 6 months
2020-05-05 devel/notify-sharp: Broken for more than 6 months
2020-05-05 devel/oozie: Broken for more than 6 months
2020-05-05 devel/p5-Cdk: Broken for more than 6 months
2020-05-05 devel/p5-Data-Average: Broken for more than 6 months
2020-05-05 devel/p5-Range-String: Broken for more than 6 months
2020-05-05 devel/p5-Shape: Broken for more than 6 months
2020-05-05 devel/pear-PHP_CodeBrowser: Broken for more than 6 months
2020-05-05 devel/pear-PHP_Depend: Broken for more than 6 months
2020-05-05 devel/pear-PHP_PMD: Broken for more than 6 months
2020-05-05 devel/pear-TheSeer_phpDox: Broken for more than 6 months
2020-05-05 devel/picp: Broken for more than 6 months
2020-05-05 devel/pig: Broken for more than 6 months
2020-05-05 devel/pty: Broken for more than 6 months
2020-05-05 devel/py-libiocage: Broken for more than 6 months
2020-05-05 devel/py-lock_file: Broken for more than 6 months
2020-05-05 devel/py-pyev: Broken for more than 6 months
2020-05-05 devel/rpm-spec-mode.el: Broken for more than 6 months
2020-05-05 devel/simple_components: Broken for more than 6 months
2020-05-05 devel/tcloo: Tcl/Tk 8.5 is nearing EOL, please consider porting to Tcl/Tk 8.6
2020-05-05 devel/tkmerge: Broken for more than 6 months
2020-05-05 devel/toh: Broken for more than 6 months
2020-05-05 devel/visualparadigm: Broken for more than 6 months
2020-05-05 dns/autotrust: Broken for more than 6 months
2020-05-05 dns/gdnsd: Broken for more than 6 months
2020-05-05 dns/p5-Stanford-DNSserver: Broken for more than 6 months
2020-05-05 dns/zonecheck: Broken for more than 6 months
2020-05-05 editors/omegaT: Broken for more than 6 months
2020-05-05 finance/cbb: Broken for more than 6 months
2020-05-05 ftp/llnlxdir: Broken for more than 6 months
2020-05-05 ftp/llnlxftp: Broken for more than 6 months
2020-05-05 games/adom: Broken for more than 6 months
2020-05-05 games/bsdrain: Broken for more than 6 months
2020-05-05 games/bunnysay: Broken for more than 6 months
2020-05-05 games/castlevox: Broken for more than 6 months
2020-05-05 games/gnarr: Broken for more than 6 months
2020-05-05 games/hohlin: Broken for more than 6 months
2020-05-05 games/hoichess: Broken for more than 6 months
2020-05-05 games/kajaani-kombat: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-jaymod-21: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-omni-bot: Broken for more than 6 months
2020-05-05 games/linux-enemyterritory-omni-bot-0660: Broken for more than 6 months
2020-05-05 games/nadar: Broken for more than 6 months
2020-05-05 games/nxengine: Broken for more than 6 months
2020-05-05 games/oneko: Broken for more than 6 months
2020-05-05 games/seahaven: Broken for more than 6 months
2020-05-05 games/sudoku_solver: Broken for more than 6 months
2020-05-05 games/tetrons: Broken for more than 6 months
2020-05-05 games/xpenguins: Broken for more than 6 months
2020-05-05 games/xvmahjongg: 64-bit unsupported
2020-05-05 games/xvmines: 64-bit unsupported
2020-05-05 graphics/EZWGL: Broken for more than 6 months
2020-05-05 graphics/kix-kmod: Broken for more than 6 months
2020-05-05 graphics/mhgui: Broken for more than 6 months
2020-05-05 graphics/mmrecover: Broken for more than 6 months
2020-05-05 hungarian/hu-phone: Broken for more than 6 months
2020-05-05 hungarian/hu-zipcodes: Broken for more than 6 months
2020-05-05 irc/charybdis: Broken for more than 6 months
2020-05-05 irc/fisg: Broken for more than 6 months
2020-05-05 irc/ircd-ru: Broken for more than 6 months
2020-05-05 irc/ircservices: Broken for more than 6 months
2020-05-05 irc/nethirc: Broken for more than 6 months
2020-05-05 irc/ratbox-services: Broken for more than 6 months
2020-05-05 irc/roxirc: Broken for more than 6 months
2020-05-05 japanese/jstrings: Broken for more than 6 months
2020-05-05 japanese/mg: Broken for more than 6 months
2020-05-05 japanese/ming: Broken for more than 6 months
2020-05-05 japanese/t2ps: Broken for more than 6 months
2020-05-05 java/castor: Broken for more than 6 months
2020-05-05 java/eclipse-windowbuilder: Broken for more than 6 months
2020-05-05 java/jdbcpool: Broken for more than 6 months
2020-05-05 java/jomp: Broken for more than 6 months
2020-05-05 java/langspec: Broken for more than 6 months
2020-05-05 java/xdoclet: Broken for more than 6 months
2020-05-05 korean/xpdf: Broken for more than 6 months
2020-05-05 lang/afnix: Broken for more than 6 months
2020-05-05 lang/elan: Broken for more than 6 months
2020-05-05 lang/gnatcross-aarch64: Broken for more than 6 months
2020-05-05 lang/hope: Broken for more than 6 months
2020-05-05 lang/hugs: Broken for more than 6 months
2020-05-05 lang/ici: Broken for more than 6 months
2020-05-05 lang/icon: Broken for more than 6 months
2020-05-05 lang/newlisp-devel: Broken for more than 6 months
2020-05-05 lang/ohugs: Broken for more than 6 months
2020-05-05 lang/opendylan: Broken for more than 6 months
2020-05-05 lang/phc: Broken for more than 6 months
2020-05-05 lang/starlogo: Broken for more than 6 months
2020-05-05 lang/yap: Broken for more than 6 months
2020-05-05 lang/yap-devel: Broken for more than 6 months
2020-05-05 mail/chk4mail: Broken for more than 6 months
2020-05-05 mail/librfc822: Broken for more than 6 months
2020-05-05 mail/mailmgr: Broken for more than 6 months
2020-05-05 mail/mreport: Broken for more than 6 months
2020-05-05 mail/msgconvert: Broken for more than 6 months
2020-05-05 mail/nullpop: Broken for more than 6 months
2020-05-05 mail/p5-Mail-MailStats: Broken for more than 6 months
2020-05-05 mail/poppassd: Broken for more than 6 months
2020-05-05 mail/prayer: Broken for more than 6 months
2020-05-05 mail/py-cyruslib: Broken for more than 6 months
2020-05-05 mail/qmail-auditor: Broken for more than 6 months
2020-05-05 mail/qmailmrtg7: Broken for more than 6 months
2020-05-05 mail/qmqtool: Broken for more than 6 months
2020-05-05 mail/relaydb: Broken for more than 6 months
2020-05-05 mail/rftp: Broken for more than 6 months
2020-05-05 mail/smtp-gated: Broken for more than 6 months
2020-05-05 mail/spamoracle: Broken for more than 6 months
2020-05-05 math/calctool: 64-bit unsupported
2020-05-05 math/diehard: Broken for more than 6 months
2020-05-05 math/e: Broken for more than 6 months
2020-05-05 math/entropy: Broken for more than 6 months
2020-05-05 math/liblbfgs: Broken for more than 6 months
2020-05-05 math/libtsnnls: Broken for more than 6 months
2020-05-05 math/ltl: Broken for more than 6 months
2020-05-05 math/naturalmath: Broken for more than 6 months
2020-05-05 math/proofgeneral: Broken for more than 6 months
2020-05-05 math/py-basemap-data: Broken for more than 6 months
2020-05-05 math/py-igakit: Broken for more than 6 months
2020-05-05 math/py-rapi: Broken for more than 6 months
2020-05-05 math/sfst: Broken for more than 6 months
2020-05-05 math/truthtable: Broken for more than 6 months
2020-05-05 math/wingz3: Broken for more than 6 months
2020-05-05 math/x12arima: Broken for more than 6 months
2020-05-05 math/xppaut: Broken for more than 6 months
2020-05-05 misc/achievo: Broken for more than 6 months
2020-05-05 misc/auto-multiple-choice: Broken for more than 6 months
2020-05-05 misc/display: Broken for more than 6 months
2020-05-05 misc/esniper: Broken for more than 6 months
2020-05-05 misc/free42-skins: Broken for more than 6 months
2020-05-05 misc/libisocodes: Broken for more than 6 months
2020-05-05 misc/loop: Broken for more than 6 months
2020-05-05 misc/p5-Norge: Broken for more than 6 months
2020-05-05 misc/pantry: Broken for more than 6 months
2020-05-05 misc/phraze: Broken for more than 6 months
2020-05-05 misc/podsleuth: Broken for more than 6 months
2020-05-05 misc/py-osd: Broken for more than 6 months
2020-05-05 misc/rfc: Broken for more than 6 months
2020-05-05 misc/spamcalc: Broken for more than 6 months
2020-05-05 misc/us-zipcodes: Broken for more than 6 months
2020-05-05 misc/xtypo: Broken for more than 6 months
2020-05-05 misc/yaunc: Broken for more than 6 months
2020-05-05 multimedia/clipgrab: Broken for more than 6 months
2020-05-05 multimedia/libsmacker: Broken for more than 6 months
2020-05-05 multimedia/lxdvdrip: Broken for more than 6 months
2020-05-05 multimedia/mjpg-streamer: Broken for more than 6 months
2020-05-05 multimedia/vcdpad: Broken for more than 6 months
2020-05-05 net/erlang-xmlrpc: Broken for more than 6 months
2020-05-05 net/etrace: Broken for more than 6 months
2020-05-05 net/fonulator: Broken for more than 6 months
2020-05-05 net/gkrellmwireless2: Broken for more than 6 months
2020-05-05 net/howl: Broken for more than 6 months
2020-05-05 net/libp0f: Broken for more than 6 months
2020-05-05 net/libsocket++: Broken for more than 6 months
2020-05-05 net/ltm: Broken for more than 6 months
2020-05-05 net/lvwimax: Broken for more than 6 months
2020-05-05 net/mono-zeroconf: Broken for more than 6 months
2020-05-05 net/nph: Broken for more than 6 months
2020-05-05 net/p5-Net-RawSock: Broken for more than 6 months
2020-05-05 net/passlogd: Broken for more than 6 months
2020-05-05 net/phamm: Broken for more than 6 months
2020-05-05 net/pim6-tools: Broken for more than 6 months
2020-05-05 net/pim6dd: Broken for more than 6 months
2020-05-05 net/pim6sd: Broken for more than 6 months
2020-05-05 net/proxy-connect: Broken for more than 6 months
2020-05-05 net/rtpbreak: Broken for more than 6 months
2020-05-05 net/s3ql: Broken for more than 6 months
2020-05-05 net/scnc: Broken for more than 6 months
2020-05-05 net/sip_scenario: Broken for more than 6 months
2020-05-05 net/slurm: Broken for more than 6 months
2020-05-05 net/ssmping: Broken for more than 6 months
2020-05-05 net/tcpdstat: Broken for more than 6 months
2020-05-05 net/uplog: Broken for more than 6 months
2020-05-05 net/vblade: Broken for more than 6 months
2020-05-05 net/wizd: Broken for more than 6 months
2020-05-05 net/wmnetload: Broken for more than 6 months
2020-05-05 net/wmnetmon: Broken for more than 6 months
2020-05-05 net/wmpiki: Broken for more than 6 months
2020-05-05 net/xipmsg: Broken for more than 6 months
2020-05-05 net-im/chattahoochie: Broken for more than 6 months
2020-05-05 net-im/jitsi: Broken for more than 6 months
2020-05-05 net-im/mu-conference: Broken for more than 6 months
2020-05-05 net-im/p5-Jabber-Connection: Broken for more than 6 months
2020-05-05 net-im/p5-Net-ICQ2000: Broken for more than 6 months
2020-05-05 net-im/pidgin-guifications: Broken for more than 6 months
2020-05-05 net-im/pidgin-osd: Broken for more than 6 months
2020-05-05 net-im/yoono: Broken for more than 6 months
2020-05-05 net-mgmt/arpalert: Broken for more than 6 months
2020-05-05 net-mgmt/nagios-check_memcached_paranoid: Broken for more than 6 months
2020-05-05 net-mgmt/netwox: Broken for more than 6 months
2020-05-05 net-mgmt/nstreams: Broken for more than 6 months
2020-05-05 net-mgmt/p5-GRNOC-Config: Broken for more than 6 months
2020-05-05 net-mgmt/p5-GRNOC-TL1: Broken for more than 6 months
2020-05-05 net-mgmt/scli: Broken for more than 6 months
2020-05-05 net-mgmt/snmp++: Broken for more than 6 months
2020-05-05 net-mgmt/victorops-nagios: Broken for more than 6 months
2020-05-05 net-p2p/libpdtp: Broken for more than 6 months
2020-05-05 net-p2p/squall: Broken for more than 6 months
2020-05-05 news/crashmail: Broken for more than 6 months
2020-05-05 news/sn: Broken for more than 6 months
2020-05-05 news/xrn: Broken for more than 6 months
2020-05-05 ports-mgmt/managepkg: Broken for more than 6 months
2020-05-05 portuguese/irpf-pt_BR: Broken for more than 6 months
2020-05-05 print/foxitreader: Broken for more than 6 months
2020-05-05 print/pdfcube: Broken for more than 6 months
2020-05-05 print/pmw: Broken for more than 6 months
2020-05-05 print/rprint: Broken for more than 6 months
2020-05-05 russian/p5-cyrillic: Broken for more than 6 months
2020-05-05 russian/tidyup-mail: Broken for more than 6 months
2020-05-05 science/abinit: Broken for more than 6 months
2020-05-05 science/atom: Broken for more than 6 months
2020-05-05 science/cp2k: Broken for more than 6 months
2020-05-05 science/esys-particle: Broken for more than 6 months
2020-05-05 science/openmx: Broken for more than 6 months
2020-05-05 science/p5-Geo-ReadGRIB: Broken for more than 6 months
2020-05-05 science/py-tensorflow-estimator: Broken for more than 6 months
2020-05-05 security/firewalk: Broken for more than 6 months
2020-05-05 security/hmap: Broken for more than 6 months
2020-05-05 security/ipfcount: Broken for more than 6 months
2020-05-05 security/libbf: Broken for more than 6 months
2020-05-05 security/log2timeline: Broken for more than 6 months
2020-05-05 security/opencdk: Broken for more than 6 months
2020-05-05 security/pad: Broken for more than 6 months
2020-05-05 security/pam_fprint: Broken for more than 6 months
2020-05-05 security/pam_per_user: Broken for more than 6 months
2020-05-05 security/razorback-dispatcher: Broken for more than 6 months
2020-05-05 security/ruby-camellia: Broken for more than 6 months
2020-05-05 security/scanhill: Broken for more than 6 months
2020-05-05 security/sinfp: Broken for more than 6 months
2020-05-05 security/ssh_askpass_gtk2: Broken for more than 6 months
2020-05-05 security/subweb: Broken for more than 6 months
2020-05-05 security/unssh: Broken for more than 6 months
2020-05-05 security/xspy: Broken for more than 6 months
2020-05-05 shells/osh: Broken for more than 6 months
2020-05-05 shells/shell-include: Broken for more than 6 months
2020-05-05 sysutils/abgx360gui: Broken for more than 6 months
2020-05-05 sysutils/autojump: Broken for more than 6 months
2020-05-05 sysutils/backupchecker: Broken for more than 6 months
2020-05-05 sysutils/cdf: Broken for more than 6 months
2020-05-05 sysutils/cdls: Broken for more than 6 months
2020-05-05 sysutils/circonus-agent: Broken for more than 6 months
2020-05-05 sysutils/cloop-utils: Broken for more than 6 months
2020-05-05 sysutils/confman: Broken for more than 6 months
2020-05-05 sysutils/detach: Broken for more than 6 months
2020-05-05 sysutils/disktool: 64-bit unsupported
2020-05-05 sysutils/downtime: Broken for more than 6 months
2020-05-05 sysutils/fusefs-fusexmp_fh: Broken for more than 6 months
2020-05-05 sysutils/fusefs-gunzip: Broken for more than 6 months
2020-05-05 sysutils/goss: Broken for more than 6 months
2020-05-05 sysutils/gpte: Broken for more than 6 months
2020-05-05 sysutils/hidesvn: Broken for more than 6 months
2020-05-05 sysutils/hoz: Broken for more than 6 months
2020-05-05 sysutils/intel-qcu: Broken for more than 6 months
2020-05-05 sysutils/iogen: Broken for more than 6 months
2020-05-05 sysutils/jailctl: Broken for more than 6 months
2020-05-05 sysutils/jx: Broken for more than 6 months
2020-05-05 sysutils/linux-crashplan: Broken for more than 6 months
2020-05-05 sysutils/mkfile: Broken for more than 6 months
2020-05-05 sysutils/mpiexec: Broken for more than 6 months
2020-05-05 sysutils/nfsping: Broken for more than 6 months
2020-05-05 sysutils/phantom: Broken for more than 6 months
2020-05-05 sysutils/ptools: Broken for more than 6 months
2020-05-05 sysutils/realsync: Broken for more than 6 months
2020-05-05 sysutils/rmonitor: Broken for more than 6 months
2020-05-05 sysutils/roottail: Broken for more than 6 months
2020-05-05 sysutils/sb16config: Broken for more than 6 months
2020-05-05 sysutils/sbase: Broken for more than 6 months
2020-05-05 sysutils/setquota: Broken for more than 6 months
2020-05-05 sysutils/sortu: Broken for more than 6 months
2020-05-05 sysutils/stmpclean: Broken for more than 6 months
2020-05-05 sysutils/tmate-slave: Broken for more than 6 months
2020-05-05 sysutils/tss: Broken for more than 6 months
2020-05-05 sysutils/vstrip: Broken for more than 6 months
2020-05-05 sysutils/watchdog: Broken for more than 6 months
2020-05-05 sysutils/wmbsdbatt: Broken for more than 6 months
2020-05-05 sysutils/wmcpuload: Broken for more than 6 months
2020-05-05 sysutils/wmcube: Broken for more than 6 months
2020-05-05 sysutils/wtail: Broken for more than 6 months
2020-05-05 textproc/csv2latex: Broken for more than 6 months
2020-05-05 textproc/da-hyphen: Broken for more than 6 months
2020-05-05 textproc/glark: Broken for more than 6 months
2020-05-05 textproc/html2tex: Broken for more than 6 months
2020-05-05 textproc/htmlsection: Broken for more than 6 months
2020-05-05 textproc/kenlm: Broken for more than 6 months
2020-05-05 textproc/libguess: Broken for more than 6 months
2020-05-05 textproc/libxml++26-reference: Broken for more than 6 months
2020-05-05 textproc/no-hunspell: Broken for more than 6 months
2020-05-05 textproc/p5-MARC: Broken for more than 6 months
2020-05-05 textproc/p5-texcount: Broken for more than 6 months
2020-05-05 textproc/pcrs: Broken for more than 6 months
2020-05-05 textproc/pear-Structures_DataGrid_DataSource_RSS: Broken for more than 6 months
2020-05-05 textproc/pear-Structures_DataGrid_DataSource_XML: Broken for more than 6 months
2020-05-05 textproc/permute: Broken for more than 6 months
2020-05-05 textproc/pocketreader: Broken for more than 6 months
2020-05-05 textproc/py-sgrep: Broken for more than 6 months
2020-05-05 textproc/rss2html: Broken for more than 6 months
2020-05-05 textproc/ruby-xmlparser: Broken for more than 6 months
2020-05-05 textproc/sv-hyphen: Broken for more than 6 months
2020-05-05 textproc/tclExpat: Broken for more than 6 months
2020-05-05 textproc/tex2im: Broken for more than 6 months
2020-05-05 textproc/topic: Broken for more than 6 months
2020-05-05 textproc/uz-hunspell: Broken for more than 6 months
2020-05-05 textproc/xmlprpr: Broken for more than 6 months
2020-05-05 www/ach: Broken for more than 6 months
2020-05-05 www/apache-forrest: Broken for more than 6 months
2020-05-05 www/apercu: Broken for more than 6 months
2020-05-05 www/cblog: Broken for more than 6 months
2020-05-05 www/drood: Broken for more than 6 months
2020-05-05 www/drraw: Broken for more than 6 months
2020-05-05 www/flood: Broken for more than 6 months
2020-05-05 www/grafana2: Broken for more than 6 months
2020-05-05 www/imgsizer: Broken for more than 6 months
2020-05-05 www/jdresolve: Broken for more than 6 months
2020-05-05 www/linkcheck: Broken for more than 6 months
2020-05-05 www/madsonic-standalone: Broken for more than 6 months
2020-05-05 www/mod_auth_external2: Broken for more than 6 months
2020-05-05 www/mod_chroot: Broken for more than 6 months
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2020-05-05 www/mod_domaintree: Broken for more than 6 months
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2020-05-05 15:38:11 +00:00
..
abyss
artemis
avida
babel
bamtools
bcftools
bedtools
biococoa
bolt-lmm
bowtie
bowtie2 Update devel/tbb to 2020.2 and bump dependent port's revisions 2020-04-01 14:14:51 +00:00
bwa
canu
cd-hit
cdbfasta
checkm
clustal-omega
clustalw
cufflinks biology/cufflinks: Update 2.2.1-83 -> 2.2.1-89 2020-03-31 06:42:22 +00:00
cytoscape
ddocent
diamond biology/diamond: Update to version 0.9.32 2020-04-24 23:04:14 +00:00
dsr-pdb
emboss - update libgd to 2.3.0 2020-05-04 21:31:39 +00:00
exonerate
fasta
fasta3
fastahack
fastdnaml
fastool
fastp biology/fastp: Upgrade to 0.20.1 2020-04-09 16:17:02 +00:00
fastqc
fasttree
fastx-toolkit
figtree
fluctuate
freebayes
garlic
gatk
gcta biology/gcta: Genome-wide Complex Trait Analysis 2020-04-15 15:22:04 +00:00
gemma
gff2ps
gmap
gperiodic
graphlan
grappa
groopm
haplohseq
hhsuite - Update net/openmpi to 4.0.3 (openmpi 1 is deprecated) 2020-04-19 09:49:02 +00:00
hisat2
hmmer
htslib
hyphy biology/hyphy: Update to version 2.5.12 2020-05-03 02:08:19 +00:00
igv
infernal
iolib
iqtree biology/iqtree: Update to version 2.0.4 2020-05-02 20:32:33 +00:00
jalview
jellyfish
kallisto kallisto: Patch for build with GCC 2020-04-01 23:35:38 +00:00
lagan
lamarc
libbigwig
libgtextutils
libsbml
linux-foldingathome Update to 7.6.9 2020-04-19 10:09:56 +00:00
mafft
mapm3
migrate
minimap2
molden
mopac
mothur
mrbayes - Swap back from net/openmpi3 to net/openmpi 2020-04-21 21:47:57 +00:00
mummer
muscle
ncbi-blast+
ncbi-cxx-toolkit
ncbi-toolkit
ngs-sdk biology/ngs-sdk: Update 2.10.4 -> 2.10.5 2020-04-04 20:09:00 +00:00
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Cluster
p5-Bio-Coordinate Cosmetic change 2020-04-02 12:01:30 +00:00
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-DB-EMBL
p5-Bio-DB-NCBIHelper
p5-Bio-FeatureIO Cosmetic change 2020-04-02 12:01:35 +00:00
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-Bio-Variation
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder
p5-TrimGalore
paml
pbbam
pbcopper
pbseqan
pear-merger
phrap
phred
phylip
phyml - Swap back from net/openmpi3 to net/openmpi 2020-04-21 21:51:56 +00:00
plink biology/plink: Whole genome association analysis toolset 2020-05-04 23:01:57 +00:00
primer3
prodigal
prodigy-lig
protomol
psi88
py-biom-format
py-biopython
py-bx-python
py-cutadapt
py-dnaio
py-fastTSNE
py-Genesis-PyAPI
py-gffutils
py-gtfparse
py-loompy
py-macs2 biology/py-macs2: Upgrade to 2.2.7.1 2020-04-14 12:13:55 +00:00
py-multiqc
py-orange3-bioinformatics
py-orange3-single-cell
py-pyfaidx
py-pysam
py-xenaPython
pyfasta
python-nexus
rainbow Update WWW 2020-03-31 23:18:09 +00:00
recombine
ruby-bio biology/ruby-bio: remove expired optional dependency on textproc/ruby-xmlparser 2020-05-05 14:22:09 +00:00
rubygem-bio
samtools
seaview
seqan
seqan1
seqan-apps
seqio
seqtk
sim4
slclust
smithwaterman
stacks
star biology/star: Upgrade to 2.7.3a 2020-04-09 12:43:03 +00:00
stringtie
tabixpp
tophat
treekin
treepuzzle
trimadap
trimmomatic
tRNAscan-SE
vcflib
vcftools
velvet
viennarna - update libgd to 2.3.0 2020-05-04 21:31:39 +00:00
vsearch
wise
Makefile Remove expired ports: 2020-05-05 15:38:11 +00:00