freebsd-ports/biology
Joseph Mingrone 94e4c0f0fb biology/diamond: Update to version 0.9.18-49
Pull in commits after the 0.9.18 release for build fixes.

Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.18
2018-03-15 02:28:09 +00:00
..
ariadne
artemis
avida
babel
bcftools
bedtools
biococoa
blat
bowtie Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
bowtie2
bwa Multiple ports: 2018-01-31 01:07:07 +00:00
canu Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
cd-hit Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
cdbfasta Multiple ports: 2018-01-31 01:07:07 +00:00
chemeq
clustalw
consed
crux Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
diamond biology/diamond: Update to version 0.9.18-49 2018-03-15 02:28:09 +00:00
emboss
fasta
fasta3
fastdnaml
fastool Multiple ports: 2018-01-31 01:07:07 +00:00
fastqc
fasttree Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
fastx-toolkit Multiple ports: 2018-01-31 01:07:07 +00:00
fluctuate
garlic Return maho@'s ports to the pool after his commit bit expired. 2018-03-11 11:20:43 +00:00
gff2ps
gmap Multiple ports: 2018-01-31 01:07:07 +00:00
gperiodic
grappa
hmmer
htslib
iolib
iqtree Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
jalview
jellyfish Multiple ports: 2018-01-31 01:07:07 +00:00
kallisto
lagan
lamarc
libgtextutils Multiple ports: 2018-01-31 01:07:07 +00:00
libsbml
linux-foldingathome
mafft
mapm3
migrate
molden Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mopac Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
mrbayes
mummer
muscle
ncbi-blast+ Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
ncbi-toolkit
njplot
p5-AcePerl
p5-Bio-ASN1-EntrezGene
p5-Bio-Coordinate
p5-Bio-Das
p5-Bio-Das-Lite
p5-Bio-FeatureIO
p5-Bio-GFF3
p5-Bio-Glite
p5-Bio-Graphics
p5-Bio-MAGETAB
p5-Bio-NEXUS
p5-Bio-Phylo
p5-Bio-SCF
p5-BioPerl
p5-BioPerl-Run
p5-transdecoder Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
p5-TrimGalore
paml
phrap
phred
phylip - Update to 3.697 2018-01-01 08:40:22 +00:00
phyml Remove now-useless, commented-out lines. 2018-03-10 23:35:03 +00:00
plink Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
plinkseq Multiple ports: 2018-01-31 01:07:07 +00:00
primer3
protomol
psi88 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-biom-format Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-biopython Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-bx-python Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-cutadapt Canonicalize PyPi WWWs: 2018-02-08 20:18:08 +00:00
py-macs2 Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
py-pysam biology/py-pysam: Update to 0.14 2018-02-10 23:01:37 +00:00
pycogent Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
pyfasta Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
python-nexus
recombine
ruby-bio
rubygem-bio
samtools
seaview biology/seaview: Update version 4.6.2=>4.6.3 2018-01-05 17:40:41 +00:00
seqan biology/seqan-apps, biology/seqan: Update to 2.4.0 2018-03-10 06:21:37 +00:00
seqan1
seqan-apps biology/seqan-apps, biology/seqan: Update to 2.4.0 2018-03-10 06:21:37 +00:00
seqio
seqtools
sim4
slclust Multiple ports: 2018-01-31 01:07:07 +00:00
ssaha Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
t_coffee Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
tinker Bump PORTREVISIONs of all users of math/mpc that we just updated to 2018-03-10 17:46:04 +00:00
treepuzzle
trimmomatic Multiple ports: 2018-01-31 01:07:07 +00:00
tRNAscan-SE
ugene Update Qt5 ports to 5.9.3. 2018-01-06 21:30:31 +00:00
vcftools Multiple ports: 2018-01-31 01:07:07 +00:00
velvet - Convert to option helper install target (add OPTIONS_DEFINE=DOCS 2018-01-11 18:09:00 +00:00
wise
xmolwt
Makefile