freebsd-ports/science
Baptiste Daroussin c5fe34636c Update jasper to 2.0.16
This is needed to be able to update gegl to latest version.
Bump revision of all consumer as the ABI is not 100% backward compatible.
Provide a patch for graphics/devil to properly build with latest jasper.
While here add a missing USES=xorg to graphics/devil
2019-12-27 13:43:00 +00:00
..
2d-rewriter
abinit
afni
agrum science/agrum: fix build on powerpc64 elfv2 2019-12-22 18:08:07 +00:00
aircraft-datcom
ALPSCore devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
antioch
apbs
atom
atompaw
avogadro2
avogadrolibs
bagel devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
bddsolve devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
berkeleygw
bodr
brian
buddy
cdcl
cdf
cdo Update jasper to 2.0.16 2019-12-27 13:43:00 +00:00
cgnslib
cgribex Update jasper to 2.0.16 2019-12-27 13:43:00 +00:00
checkmol
chemical-mime-data
chemps2
chemtool
chemtool-devel
chrono
clhep
clipper
code_saturne
colt
coordgenlibs devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
coot
cp2k
cp2k-data
crf++
dalton
datawarrior
dcl
devisor
dftbplus
dkh
dlib-cpp
dlpoly-classic
drawxtl
dvc
eccodes
elk
epte
erd
erkale
erkale-pseudopotentials
esys-particle devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
fastcap
fasthenry
fisicalab
fleur
fsom
fvcom
fvcom-mpi
gabedit
gamess-us
gchemutils Update to 0.10.46 and only keep one libgoffice version 2019-12-16 17:06:38 +00:00
gdma
getdp - Update to 3.3.0. 2019-12-22 02:28:57 +00:00
ghemical
ghmm
gnudatalanguage
gpaw-setups
gramps science/gramps: Update to 5.1.1 2019-12-10 13:54:03 +00:00
grib_api
gromacs science/gromacs: Update 2019.4 -> 2019.5 2019-12-24 07:45:13 +00:00
gsmc
gtamsanalyzer
gwyddion Deprecate a few ports 2019-12-26 07:54:28 +00:00
h5utils
h5z-zfp
harminv
hdf
hdf5
hdf5-18
healpix
highfive devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
hypre
iboview devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
InsightToolkit
isaac-cfd
jdftx
jmol science/jmol: Update 14.30.0 -> 14.30.1 2019-12-14 07:44:40 +00:00
jstrack
kalzium KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
kim-api
kst2
lammps
lamprop
latte
libaec
libccp4
libcint
libctl
libefp
libgeodecomp devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
libghemical
libgridxc
libint
libint2 devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
libkml devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
liblinear
libmsym
liboglappth
libquantum
libssm
libsvm
libsvm-python
libvdwxc
libxc
liggghts
lm
luscus
madness Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
maeparser devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
massxpert
mbdyn
mcstas
mcstas-comps
mcxtrace
mcxtrace-comps
mdynamix
medit
meep Deprecate ports broken for too long 2019-12-10 09:02:42 +00:00
metaphysicl
minc2
mmdb2
mmtf-cpp
mol2ps
molgif
molscript
molsketch
mpb
mpqc
msms
multiwfn
namd
ncnn science/ncnn: Update 20191113 -> 20191223 2019-12-24 07:25:08 +00:00
nest
netcdf Update to 4.7.3 2019-12-08 16:52:27 +00:00
netcdf-cxx
netcdf-fortran
nifticlib
nwchem
nwchem-data
octopus
openbabel
openkim
openkim-models
openmx
opensim-core
opensph
opsin
p5-Algorithm-SVMLight
p5-Chemistry-3DBuilder
p5-Chemistry-Bond-Find
p5-Chemistry-Canonicalize
p5-Chemistry-Elements
p5-Chemistry-File-MDLMol
p5-Chemistry-File-Mopac
p5-Chemistry-File-PDB
p5-Chemistry-File-SLN
p5-Chemistry-File-SMARTS
p5-Chemistry-File-SMILES
p5-Chemistry-File-VRML
p5-Chemistry-File-XYZ
p5-Chemistry-FormulaPattern
p5-Chemistry-InternalCoords
p5-Chemistry-Isotope
p5-Chemistry-MacroMol
p5-Chemistry-MidasPattern
p5-Chemistry-Mok
p5-Chemistry-Mol
p5-Chemistry-Pattern
p5-Chemistry-Reaction
p5-Chemistry-Ring
p5-Geo-BUFR
p5-Geo-Coordinates-Converter
p5-Geo-Coordinates-Converter-iArea
p5-Geo-ReadGRIB
p5-Geo-WebService-Elevation-USGS
p5-Mcstas-Tools
p5-PerlMol
p5-Physics-Unit
packmol
pagmo2 Update devel/tbb to 2020.0 and bump dependent ports' revisions [1] 2019-12-26 16:25:22 +00:00
paje
paraview
pcmsolver
PETSc
pnetcdf
psychopy Deprecate a few ports 2019-12-26 07:54:28 +00:00
pulseview devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
py-abipy
py-asdf
py-ase science/py-ase: Update 3.18.1 -> 3.19.0 2019-12-27 06:46:45 +00:00
py-avogadrolibs
py-cdo
py-chainer
py-chainer-chemistry science/py-chainer-chemistry: Update 0.6.0 -> 0.7.0 2019-12-22 03:10:17 +00:00
py-chempy
py-coards
py-DendroPy
py-dlib devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
py-eccodes-python Update to 0.9.4 2019-12-08 17:03:53 +00:00
py-geometer
py-gpaw
py-GPy
py-GPyOpt
py-gsd
py-h5py
py-hcluster Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-kinematics
py-lifelines
py-MDAnalysis
py-MDAnalysisTests
py-mdp
py-mlpy
py-mmtf-python
py-molmod
py-netCDF4
py-obspy
py-oddt science/py-oddt: Update 0.6 -> 0.7 2019-12-27 05:12:21 +00:00
py-OpenFermion
py-openpiv
py-paida
py-paramz
py-phono3py
py-phonopy
py-pupynere
py-pyaixi
py-pydicom
py-PyFR
py-pygeodesy
py-pymatgen
py-pymol
py-pyosf
py-PyQuante
py-pysal
py-pyteomics
py-pyteomics.biolccc Deprecate a few ports 2019-12-26 07:54:28 +00:00
py-qcelemental
py-qcengine
py-qspin
py-quantities
py-rmf
py-rmsd
py-ruffus
py-ScientificPython
py-scikit-fuzzy
py-scikit-learn - Update to 0.22 2019-12-17 13:09:33 +00:00
py-scikit-sparse
py-scimath
py-scipy
py-scoria
py-SimpleSpectral
py-spglib
py-tensorflow
py-tensorflow-estimator
py-veusz
py-ws2300
pybrain
pycdf Deprecate a few ports 2019-12-26 07:54:28 +00:00
pynn
qbox
qcl
qmcpack devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
quantum-espresso
quantum-espresso-pseudopotentials
qwalk
R-cran-AMORE
R-cran-bayesm
R-cran-cmprsk
R-cran-DCluster
R-cran-e1071
R-cran-eco
R-cran-Epi
R-cran-epicalc
R-cran-etm
R-cran-fastICA
R-cran-kernlab
R-cran-snow
R-cran-som
R-cran-udunits2
rdkit devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
rmf devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
rubygem-ai4r
rubygem-cdo
rubygem-rgeo
rubygem-rgeo-geojson
rubygem-rgeo-proj4
rubygem-rgeo-shapefile
rubygem-ruby-dcl
rubygem-ruby-netcdf
scidavis
siesta
sigrok-cli
sigrok-firmware
sigrok-firmware-fx2lafw
sigrok-firmware-utils
silo
simbody science/simbody: Update 3.6.1 -> 3.7 2019-12-09 16:20:00 +00:00
simgrid devel/boost-*: update to 1.72.0 2019-12-11 17:53:48 +00:00
simint
simlib
simsmith
smoldyn
sparta
spglib
step KDE's December 2019 Apps Update 2019-12-12 23:24:36 +00:00
svmlight
szip
teem
tfel science/tfel: update to version 3.3 2019-12-21 19:53:14 +00:00
tinker
udunits
v_sim
vipster
vmd
voro++
wannier90
wwplot
wxmacmolplt
xcrysden
xdrawchem
xfce4-equake-plugin
yoda
Makefile